Files in clinDR

Simulation and Analysis Tools for Clinical Dose Response Modeling

MD5

NAMESPACE

DESCRIPTION

INDEX

R/targetD.R R/print.fitEmax.R R/summary.emaxsim.R R/emaxalt.R R/predict.fitEmaxB.R R/DRDensityPlot.R R/print.emaxPrior.R R/plot.plotB.R R/SeEmax.R R/summary.emaxsimobj.R R/plot.emaxsimB.R R/nllogis.R R/targetBeta.R R/predict.emaxsimB.R R/plot.emaxsimobj.R R/plot.emaxsim.R R/plotB.R R/update.emaxsimobj.R R/Brextract.R R/targetCI.R R/generic.R R/emaxsolve.R R/summary.fitEmax.R R/print.emaxsimB.R R/randomEmax.R R/plotD.R R/fitEmaxB.R R/plot.fitEmax.R R/fitEmax.R R/checkMonoEmax.R R/compileStanModels.R R/bpchkMonoEmax.R R/print.emaxsimobj.R R/showStanModels.R R/emaxsim.R R/predict.emaxsim.R R/startEmax.R R/runSimulations.R R/predict.fitEmax.R R/sequant.R R/selEstan.R R/FixedMean.R R/RandEmax.R R/print.emaxsim.R R/emaxfun.R R/predict.emaxsimobj.R R/predict.emaxalt.R R/emaxsimB.R R/iqr.R R/plotBdensity.R R/summary.emaxsimB.R

inst/NEWS

inst/doc/gettingStarted.Rmd

inst/doc/gettingStarted.html

inst/doc/DRmodeling.html

inst/doc/mixturePrior.html

inst/doc/DRmodeling.Rmd inst/doc/mixturePrior.Rmd

inst/shiny/emaxsimB.html

inst/shiny/app.R

inst/shiny/clindr_Shiny_application_documentation.html

inst/shiny/emaxsim.html

inst/shiny/emaxPrior_control.html

inst/shiny/clindr_Shiny_application_documentation.md inst/shiny/tests/testshiny.R

inst/shiny/tests/testShinyOutput.txt

inst/models/basemodel.stan

inst/models/mrmodel.stan

inst/tests/test.emaxsimBlocalParmMix.R inst/tests/test.SeEmax.R inst/tests/test.fitEmaxBlocalParm.R inst/tests/test.targetcodes.R inst/tests/test.compareTvsMix2.R inst/tests/test.predict.emaxsim.R inst/tests/test.emaxsimBlocalParm.R inst/tests/test.fitEmaxBlocalParmtmp.R inst/tests/test.fitEmax.R inst/tests/test.genfunctions.R inst/tests/test.fitEmaxB.R inst/tests/test.emaxsim.R inst/tests/test.checkMonoEmax.R inst/tests/test.fitEmaxBlocalParmMix.R inst/tests/test.update.emaxsimobj.R inst/tests/test.shinyapp.R inst/tests/test.print.emaxPrior.R inst/tests/test.compareTvsMix.R

inst/tests/imputeMIL2.stan

inst/tests/runIndvidualTests.R inst/tests/fitModelL3.R inst/tests/runIndvidualTests2.R inst/tests/test.emaxfun.R inst/tests/sourcev2.R inst/tests/test.emaxsimB.R

inst/tests/currentPriors.RData

inst/tests/test.checkMonoEmaxlocalParm.R inst/tests/extraGraphics/test.plotD.R

inst/tests/extraGraphics/cmpFiles.txt

inst/tests/extraGraphics/runGraphics.R inst/tests/extraGraphics/test.densityplots.R inst/tests/extraGraphics/test.plot.fitEmaxB.R inst/tests/extraGraphics/test.plot.emaxsimBobj.R inst/tests/extraGraphics/test.plot.fitEmax.R inst/tests/extraGraphics/test.plot.emaxsimobj.R inst/tests/extraGraphics/test.plotB.R inst/tests/extraGraphics/pdfoutput/output.fitEmax_new.pdf inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_new.pdf inst/tests/extraGraphics/pdfoutput/output.densityplot_new.pdf inst/tests/extraGraphics/pdfoutput/output.plotB_old.pdf inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_old.pdf inst/tests/extraGraphics/pdfoutput/output.plotD_old.pdf inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_old.pdf inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_new.pdf inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_old.pdf inst/tests/extraGraphics/pdfoutput/output.densityplot_old.pdf inst/tests/extraGraphics/pdfoutput/output.plotD_new.pdf inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_new.pdf inst/tests/extraGraphics/pdfoutput/output.fitEmax_old.pdf inst/tests/extraGraphics/pdfoutput/output.plotB_new.pdf

build/vignette.rds

vignettes/gettingStarted.Rmd

vignettes/emaxPriorSep16212313.docx

vignettes/script.R

vignettes/DRmodeling.Rmd.orig

vignettes/emaxPriorSep20160040.docx

vignettes/mixturePrior.Rmd.orig

vignettes/emaxPriorSep20202136.docx

vignettes/README.txt

vignettes/DRmodeling.Rmd vignettes/mixturePrior.Rmd

vignettes/gettingStarted.Rmd.orig

vignettes/mixfig/mixmapc-1.png

vignettes/mixfig/mixmap-1.png

vignettes/mixfig/plotc-1.png

vignettes/mixfig/plotEmaxBayes-1.png

vignettes/gsfig/explot-1.png

vignettes/DRmodelPlots/traceplot-1.png

vignettes/DRmodelPlots/study2_traceplot-1.png

vignettes/DRmodelPlots/plotraw-1.png

vignettes/DRmodelPlots/plot_fit_dif-1.png

vignettes/DRmodelPlots/plot_study2-1.png

vignettes/DRmodelPlots/mcpmod_candidate-1.png

vignettes/DRmodelPlots/plot_fit-1.png

vignettes/DRmodelPlots/pairplot-1.png

vignettes/DRmodelPlots/study2_pairplot-1.png

data/metaData.rda

man/plot.fitEmaxB.Rd man/predict.emaxsimB.Rd man/print.fitEmaxB.Rd man/summary.emaxsimBobj.Rd man/print.emaxsimB.Rd man/print.emaxsim.Rd man/plot.emaxsimB.Rd man/update.emaxsimobj.Rd man/coef.Rd man/plot.fitEmax.Rd man/plot.emaxsimobj.Rd man/summary.fitEmaxB.Rd man/plotD.Rd man/showStanModels.Rd man/BrextractB.Rd man/predict.fitEmax.Rd man/plot.emaxsimBobj.Rd man/emaxfun.Rd man/emaxsim.Rd man/summary.emaxsimobj.Rd man/emaxalt.Rd man/SeEmax.Rd man/summary.fitEmax.Rd man/plotBdensity.Rd man/predict.emaxsimBobj.Rd man/print.emaxsimBobj.Rd man/vcov.Rd man/targetBeta.Rd man/targetCI.Rd man/predict.fitEmaxB.Rd man/RandEmax.Rd man/print.emaxsimobj.Rd man/print.emaxPrior.Rd man/randomEmax.Rd man/selEstan.Rd man/plotB.Rd man/sigma.Rd man/predict.emaxsimobj.Rd man/bpchkMonoEmax.Rd man/checkMonoEmax.Rd man/emaxsolve.Rd man/predict.emaxsim.Rd man/print.fitEmax.Rd man/DRDensityPlot.Rd man/Brextract.Rd man/plot.emaxsim.Rd man/nllogis.Rd man/targetD.Rd man/fitEmax.Rd man/summary.emaxsim.Rd man/clinDR-package.Rd man/runSimulations.Rd man/metaData.Rd man/compileStanModels.Rd man/fitEmaxB.Rd man/plot.plotB.Rd man/emaxsimB.Rd man/emaxPrior.control.Rd man/startEmax.Rd man/FixedMean.Rd man/prior.control.Rd man/mcmc.control.Rd man/predict.emaxalt.Rd man/summary.emaxsimB.Rd

clinDR documentation built on Sept. 21, 2026, 9:07 a.m.