Man pages for clinDR
Simulation and Analysis Tools for Clinical Dose Response Modeling

BrextractExtract a simulation from the output of emaxsim
BrextractBExtract a simulation from the output of emaxsimB
checkMonoEmaxBayes posterior predictive test for Emax (monotone) model fit
clinDR-packageBayesian and maximum likelihood Emax model fitting, graphics...
compileStanModelsCompile 'rstan' Emax models after package 'clinDR' is...
DRDensityPlotPlot Bayes or confidence interval density contours over a...
emaxaltFit 4- or 3-parameter Emax model substituting simpler curves...
emaxfunVectorized versions of the hyperbolic and sigmoidal Emax...
emaxsimSimulate Emax maximum likelihood estimation
emaxsimBSimulate Emax Bayesian estimation
examples14Data from 2014 dose response meta-analysis
examples16Data from 2016 dose response meta-analysis
fitEmaxML fit of hyperbolic or sigmoidal Emax models to...
fitEmaxBBayesian fit of hyperbolic or sigmoidal Emax models to...
FixedMeanFixed means (proportions) random data constructor for emaxsim...
mcmc.controlSettings for 'restan' execution in function 'fitEmaxB'
nllogisThe negative log likelihood function for a 3- or 4- parameter...
plotBPlot Bayes dose response curve and dose group means
plotBdensityDensity plot displaying Bayes prior or posterior dose...
plotDBasic plot of dose group means
plot.emaxsimPlot the output of emaxsim
plot.emaxsimBPlot the output of emaxsimB
plot.emaxsimBobjPlot dose response from a data set generated by emaxsimB
plot.emaxsimobjPlot dose response from a data set generated by emaxsim
plot.fitEmaxPlot a Emax model and dose group means.
plot.fitEmaxBPlot a Emax model and dose group means.
plot.plotBPlot Bayes dose response curve and dose group means
predict.emaxaltMean response and SE for specified doses for a simulated...
predict.emaxsimMean response and SE for specified doses for each replicate...
predict.emaxsimBobjMean response estimates (posterior means) and SE (posterior...
predict.emaxsimobjMean response and SE for specified doses for a simulated...
predict.fitEmaxEstimated mean and confidence intervals derived from the...
predict.fitEmaxBEstimated mean and posterior intervals derived from a...
print.emaxsimPrint simulation output from emaxsim
print.emaxsimBPrint simulation output from emaxsimB
print.emaxsimBobjPrint a summary of the fitted Emax model
print.emaxsimobjPrint a data set generated by emaxsim
print.fitEmaxPrint a summary of the fitted Emax model
print.fitEmaxBPrint a summary of the fitted Bayesian Emax model
prior.controlSet the parameters of the prior distribution for the Emax...
RandEmaxRandom data constructor function for emaxsim creating random...
SeEmaxAsymptotic SE for dose response estimates from a 3- or 4-...
selEstanSelect a pre-compiled 'rstan' Emax model
startEmaxCompute starting parameter values for the 3- or 4- Emax...
summary.emaxsimSummary of output of emaxsim
summary.emaxsimBSummary of output of emaxsimB
summary.emaxsimBobjSummarize Emax fit to a data set generated by emaxsimB
summary.emaxsimobjSummarize Emax fit to a data set generated by emaxsim
summary.fitEmaxPrint a summary of the fitted Emax model
summary.fitEmaxBPrint a summary of the fitted Bayesian Emax model
targetBetaFind a scaled Beta distribution matching specified...
targetCICompute the dose with confidence interval exceeding a target...
targetDCompute the MLE (and its SE) of the dose achieving a...
update.emaxsimobjUpdate estimation in a data set generated by emaxsim
clinDR documentation built on Dec. 4, 2017, 5:06 p.m.