| bpchkMonoEmax | Bayes posterior predictive test for Emax (monotone) model fit |
| Brextract | Extract a simulation from the output of emaxsim |
| BrextractB | Extract a simulation from the output of emaxsimB |
| checkMonoEmax | Bayes posterior predictive test for Emax (monotone) model fit |
| clinDR-package | Bayesian and maximum likelihood Emax model fitting, graphics... |
| coef | Extract Emax model parameter estimates |
| compileStanModels | Compile 'rstan' Emax models after package 'clinDR' is... |
| DRDensityPlot | Plot Bayes or confidence interval density contours over a... |
| emaxalt | Fit 4- or 3-parameter Emax model substituting simpler curves... |
| emaxfun | Vectorized versions of the hyperbolic and sigmoidal Emax... |
| emaxPrior.control | Set the parameters of the prior distribution for the Emax... |
| emaxsim | Simulate Emax maximum likelihood estimation |
| emaxsimB | Simulate Emax Bayesian estimation |
| emaxsolve | Solve Emax function for target value |
| fitEmax | ML fit of hyperbolic or sigmoidal Emax models to... |
| fitEmaxB | Bayesian fit of hyperbolic or sigmoidal Emax models to... |
| FixedMean | Fixed means (proportions) random data constructor for emaxsim... |
| mcmc.control | Settings for 'restan' execution in function 'fitEmaxB' |
| metaData | Dose response data from several published meta-analyses |
| nllogis | The negative log likelihood function for a 3- or 4- parameter... |
| plotB | Plot Bayes dose response curve and dose group means |
| plotBdensity | Density plot displaying Bayes prior or posterior dose... |
| plotD | Basic plot of dose group means |
| plot.emaxsim | Plot the output of emaxsim |
| plot.emaxsimB | Plot the output of emaxsimB |
| plot.emaxsimBobj | Plot dose response from a data set generated by emaxsimB |
| plot.emaxsimobj | Plot dose response from a data set generated by emaxsim |
| plot.fitEmax | Plot a Emax model and dose group means. |
| plot.fitEmaxB | Plot a Emax model and dose group means. |
| plot.plotB | Plot Bayes dose response curve and dose group means |
| predict.emaxalt | Mean response and SE for specified doses for a simulated... |
| predict.emaxsim | Mean response and SE for specified doses for each replicate... |
| predict.emaxsimB | Mean response and SE for each replicate data set in an... |
| predict.emaxsimBobj | Mean response estimates (posterior means) and SE (posterior... |
| predict.emaxsimobj | Mean response and SE for specified doses for a simulated... |
| predict.fitEmax | Estimated mean/proportion and confidence intervals derived... |
| predict.fitEmaxB | Estimated mean and posterior intervals derived from a... |
| print.emaxPrior | Print protocol or sap text describing the prior distribution... |
| print.emaxsim | Print simulation output from emaxsim |
| print.emaxsimB | Print simulation output from emaxsimB |
| print.emaxsimBobj | Print a summary of the fitted Emax model |
| print.emaxsimobj | Print a data set generated by emaxsim |
| print.fitEmax | Print a summary of the fitted Emax model |
| print.fitEmaxB | Print a summary of the fitted Bayesian Emax model |
| prior.control | Set the parameters of the prior distribution for the Emax... |
| RandEmax | Random data constructor function for emaxsim creating random... |
| randomEmax | Random data constructor function for emaxsim(B) creating... |
| runSimulations | Shiny app for function 'emaxsim(B)' |
| SeEmax | Asymptotic SE for dose response estimates from a 3- or 4-... |
| selEstan | Select a pre-compiled 'rstan' Emax model |
| showStanModels | Display 'STAN' model code. |
| sigma | Extract Emax model residual SD estimates |
| startEmax | Compute starting parameter values for the 3- or 4- Emax... |
| summary.emaxsim | Summary of output of emaxsim |
| summary.emaxsimB | Summary of output of emaxsimB |
| summary.emaxsimBobj | Summarize Emax fit to a data set generated by emaxsimB |
| summary.emaxsimobj | Summarize Emax fit to a data set generated by emaxsim |
| summary.fitEmax | Print a summary of the fitted Emax model |
| summary.fitEmaxB | Print a summary of the fitted Bayesian Emax model |
| targetBeta | Find a scaled Beta distribution matching specified... |
| targetCI | Compute the dose with confidence interval exceeding a target... |
| targetD | Compute the MLE (and its SE) of the dose achieving a... |
| update.emaxsimobj | Update estimation in a data set generated by emaxsim |
| vcov | Extract Emax model variance-covariance matrix for ML... |
