tableClinData: Create a 'clinical data table', associated to a plot.

In clinDataReview: Clinical Data Review Tool

Create a 'clinical data table', associated to a plot.

Description

Interactive table is created, with the possibility to have clickeable link to patient-specific report, and included within a button.

Usage

tableClinData(
  data,
  idVar = "USUBJID",
  idLab = getLabelVar(idVar, labelVars = labelVars),
  keyVar = NULL,
  keyLab = getLabelVar(keyVar, labelVars = labelVars),
  pathVar = NULL,
  pathLab = getLabelVar(pathVar, labelVars = labelVars),
  pathExpand = FALSE,
  tableVars = colnames(data),
  tableLab = getLabelVar(tableVars, labelVars = labelVars),
  tableButton = TRUE,
  tablePars = list(),
  id = paste0("plotClinData", sample.int(n = 1000, size = 1)),
  labelVars = NULL,
  verbose = FALSE
)

Arguments

data	Data.frame with data.
idVar	String with variable containing subject ID.
idLab	String with label for idVar.
keyVar	String with unique key variable, identifying unique group for which the link between the table and the plot should be done.
keyLab	String with label for keyVar.
pathVar	String with variable of data containing hyperlinks with path to the subject-specific report, formatted as: <a href="./path-to-report">label</a> . If multiple, they should be separated by: ', '. The report(s) will be: compressed to a zip file and downloaded if the user clicks on the 'p' (a.k.a 'profile') key when hovering on a point of the plot included in a collapsible row, and clickable with hyperlinks in the table
pathLab	String with label for pathVar, included in the collapsible row in the table.
pathExpand	Logical, should the variable in pathExpand be included in a collapsible row or as hyperlink in the table? Should be TRUE for if multiple paths are included for each idVar, FALSE otherwise (by default).
tableVars	Character vector with variables to be included in the table.
tableLab	Named character vector with labels for each tableVars.
tableButton	Logical, if TRUE (by default) the table is included within an HTML button.
tablePars	List with parameters passed to the getClinDT function.
id	String with general id for the plot: 'id' is used as group for the SharedData 'button:[id]' is used as button ID if table is TRUE If not specified, a random id, as 'plotClinData[X]' is used.
labelVars	Named character vector containing variable labels.
verbose	Logical, if TRUE (FALSE by default) progress messages are printed in the current console.

Value

datatable

Author(s)

Laure Cougnaud

clinDataReview documentation built on March 7, 2023, 5:13 p.m.