R/data.R

In clinUtils: General Utility Functions for Analysis of Clinical Data

#' Example of SDTM datasets from the CDISC original Pilot 01 study
#' 
#' This contains a subset of the CDISC original Pilot 01 study dataset for:
#' \itemize{
#' \item{a selected subset of subjects}
#' \item{a selected subset of domains: 
#' \itemize{
#' \item{demographics ('dm')}
#' \item{treatment exposure ('ex')}
#' \item{concomitant medications ('cm')}
#' \item{medical history ('mh')}
#' \item{adverse event ('ae')}
#' \item{laboratory ('lb')}
#' \item{vital signs ('vs')}
#' \item{subject visit ('sv')}
#' }
#' }
#' }
#' This dataset was created following the SDTM Version 1.1
#' standard.
#' @format List of data.frames containing the SDTM
#' dataset for each selected domain.\cr
#' Labels for the different variables across datasets
#' is available via the \code{labelVars} attribute.
#' @seealso \link{loadDataADaMSDTM}
#' @name dataSDTMCDISCP01
#' @docType data
#' @author Laure Cougnaud
#' @source Original (and entire) datasets are available in: \cr
#' \url{https://github.com/phuse-org/phuse-scripts/tree/master/data/sdtm/cdiscpilot01}
#' See in particular the \emph{define.xml} file
#' for further description of the
#' datasets and variables name.
#' @keywords data
NULL

#' Example of ADaM datasets from the CDISC original Pilot 01 study
#' 
#' This contains a subset of the CDISC Pilot 01 study dataset for:
#' \itemize{
#' \item{a selected subset of subjects}
#' \item{a selected subset of domains: 
#' \itemize{
#' \item{subject-level ('adsl')}
#' \item{adverse event ('adae')}
#' \item{laboratory chemistry data('adlbc')}
#' \item{vital signs ('advs')}
#' \item{concomitant medications ('adcm')}
#' \item{efficacy: 
#' \itemize{
#' \item{ADAS-COG Data ('adqsadas'), containing one of the 
#'   primary endpoint: ADAS-Cog (11)\cr
#'   (Alzheimer's Disease Assessment Scale - Cognitive Subscale}
#' \item{CIBIC+ questionnaire data ('adqscibc'), containing one 
#' of the primary endpoint: CIBIC+\cr
#' (Video-referenced Clinician's Interview-based Impression of Change)}
#' }
#' }
#' \item{pharmacokinetic parameters ('adpp')\cr
#' Please note that this dataset contains different sets 
#' of subjects than the other example datasets.}
#' }}
#' }
#' This dataset was created following the ADaM Version 2.0
#' standard.
#' This dataset contains the 'Modified and augmented version 
#' of cdiscpilot01' dataset.
#' @format List of data.frames containing the ADaM
#' dataset for each selected domain.\cr
#' Labels for the different variables across datasets
#' is available via the \code{labelVars} attribute.
#' @seealso \link{loadDataADaMSDTM}
#' @name dataADaMCDISCP01
#' @docType data
#' @author Laure Cougnaud
#' @source Original (and entire) datasets are available in: \cr
#' \url{https://github.com/phuse-org/phuse-scripts/tree/master/data/adam/cdisc}
#' See in particular the \emph{define.xml} file
#' for further description of the
#' datasets and variables name.
#' @keywords data
NULL