Man pages for coda
Output Analysis and Diagnostics for MCMC
| as.ts.mcmc | Coerce mcmc object to time series |
| autocorr | Autocorrelation function for Markov chains |
| autocorr.diag | Autocorrelation function for Markov chains |
| autocorr.plot | Plot autocorrelations for Markov Chains |
| batchSE | Batch Standard Error |
| bugs2jags | Convert WinBUGS data file to JAGS data file |
| codamenu | Main menu driver for the coda package |
| coda.options | Options settings for the codamenu driver |
| Cramer | The Cramer-von Mises Distribution |
| crosscorr | Cross correlations for MCMC output |
| crosscorr.plot | Plot image of correlation matrix |
| cumuplot | Cumulative quantile plot |
| densplot | Probability density function estimate from MCMC output |
| effectiveSize | Effective sample size for estimating the mean |
| gelman.diag | Gelman and Rubin's convergence diagnostic |
| gelman.plot | Gelman-Rubin-Brooks plot |
| geweke.diag | Geweke's convergence diagnostic |
| geweke.plot | Geweke-Brooks plot |
| heidel.diag | Heidelberger and Welch's convergence diagnostic |
| HPDinterval | Highest Posterior Density intervals |
| linepost | Simple linear regression example |
| mcmc | Markov Chain Monte Carlo Objects |
| mcmc.convert | Conversions of MCMC objects |
| mcmc.list | Replicated Markov Chain Monte Carlo Objects |
| mcmc.subset | Extract or replace parts of MCMC objects |
| mcmcUpgrade | Upgrade mcmc objects in obsolete format |
| mcpar | Mcpar attribute of MCMC objects |
| multi.menu | Choose multiple options from a menu |
| nchain | Dimensions of MCMC objects |
| plot.mcmc | Summary plots of mcmc objects |
| raftery.diag | Raftery and Lewis's diagnostic |
| read.and.check | Read data interactively and check that it satisfies... |
| read.coda | Read output files in CODA format |
| read.coda.interactive | Read CODA output files interactively |
| read.openbugs | Read CODA output files produced by OpenBUGS |
| rejectionRate | Rejection Rate for Metropolis-Hastings chains |
| spectrum0 | Estimate spectral density at zero |
| spectrum0.ar | Estimate spectral density at zero |
| summary.mcmc | Summary statistics for Markov Chain Monte Carlo chains |
| thin | Thinning interval |
| time.mcmc | Time attributes for mcmc objects |
| traceplot | Trace plot of MCMC output |
| trellisplots | Trellis plots for mcmc objects |
| varnames | Named dimensions of MCMC objects |
| window.mcmc | Time windows for mcmc objects |
