spectrum0: Estimate spectral density at zero
In coda: Output Analysis and Diagnostics for MCMC

Description Usage Arguments Details Value Theory Note References See Also

The spectral density at frequency zero is estimated by fitting a glm to the low-frequency end of the periodogram. spectrum0(x)/length(x) estimates the variance of mean(x).

1	spectrum0(x, max.freq = 0.5, order = 1, max.length = 200)

`x`	A time series.
`max.freq`	The glm is fitted on the frequency range (0, max.freq]
`order`	Order of the polynomial to fit to the periodogram.
`max.length`	The data `x` is aggregated if necessary by taking batch means so that the length of the series is less than `max.length`. If this is set to `NULL` no aggregation occurs.

The raw periodogram is calculated for the series x and a generalized linear model with family Gamma and log link is fitted to the periodogram.

The linear predictor is a polynomial in terms of the frequency. The degree of the polynomial is determined by the parameter order.

A list with the following values

spec

The predicted value of the spectral density at frequency zero.

Heidelberger and Welch (1991) observed that the usual non-parametric estimator of the spectral density, obtained by smoothing the periodogram, is not appropriate for frequency zero. They proposed an alternative parametric method which consisted of fitting a linear model to the log periodogram of the batched time series. Some technical problems with model fitting in their original proposal can be overcome by using a generalized linear model.

Batching of the data, originally proposed in order to save space, has the side effect of flattening the spectral density and making a polynomial fit more reasonable. Fitting a polynomial of degree zero is equivalent to using the ‘batched means’ method.

The definition of the spectral density used here differs from that used by spec.pgram. We consider the frequency range to be between 0 and 0.5, not between 0 and frequency(x)/2.

The model fitting may fail on chains with very high autocorrelation.

Heidelberger, P and Welch, P.D. A spectral method for confidence interval generation and run length control in simulations. Communications of the ACM, Vol 24, pp233-245, 1981.

spectrum, spectrum0.ar, glm.

coda documentation built on Oct. 24, 2020, 9:10 a.m.