Description Usage Arguments Value See Also Examples
This helper function is designed to act upon a list of coi5p objects and extract the object components that the user requires.
1 | flatten_coi5p(x, keep_cols = "all")
|
x |
A list of coi5p objects. |
keep_cols |
The name of a coi5p object component, or a vector of components that should be turned into dataframe columns. Available components are: name, raw, framed, aaSeq, aaScore, indel_likely, stop_codons. |
A dataframe with the coi5p object information flattened into columns.
1 2 3 4 5 6 7 8 9 10 | #create a list of coi5p objects
coi_output = lapply(example_barcode_data$sequence, function(x){
coi5p_pipe(x)
})
#flatten the list into a dataframe
coi_df = flatten_coi5p(coi_output)
#extract only a single column
coi_framed = flatten_coi5p(coi_output, keep_cols = "framed")
#or subset multiple columns
coi_framed = flatten_coi5p(coi_output, keep_cols = c("framed", "aaSeq"))
|
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