translate_codon: Censored Translation of a codon.
In coil: Contextualization and Evaluation of COI-5P Barcode Data
translate_codon R Documentation
Censored Translation of a codon.
Description
Translate a codon of DNA sequence using the censored translation table.
this translates codons for which the amino acids is unambiguous across
mitochondrial genetic codes across the animal kingdom and does not
translate those for which the amino acid varies,
but rather outputs a ? in the string.
Usage
translate_codon(codon)
Arguments
codon
a three letter DNA string.
Details
Censored translation table:
FFLLSSSSYY?*CCWWLLLLPPPPHHQQRRRRII?MTTTTNN?KSS??VVVVAAAADDEEGGGG
Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
coil documentation built on May 29, 2024, 10:51 a.m.
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| translate_codon | R Documentation |
Censored Translation of a codon.
Description
Translate a codon of DNA sequence using the censored translation table. this translates codons for which the amino acids is unambiguous across mitochondrial genetic codes across the animal kingdom and does not translate those for which the amino acid varies, but rather outputs a ? in the string.
Usage
translate_codon(codon)
Arguments
codon |
a three letter DNA string. |
Details
Censored translation table: FFLLSSSSYY?*CCWWLLLLPPPPHHQQRRRRII?MTTTTNN?KSS??VVVVAAAADDEEGGGG Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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