set_frame: Take an input sequence and get it into the reading frame.
In coil: Contextualization and Evaluation of COI-5P Barcode Data
Description
Uses the path of the ntPHMM to locate the first contiguous
set of 5 matching base pairs (5 sequential 1s) for both the
front and the back of the sequence. Sequence information outside of this
first set of matches is trimmed (low probability of being true barcode sequence).
Usage
1
set_frame(org_seq, path_out)
coil documentation built on April 21, 2021, 1:06 a.m.
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Description
Uses the path of the ntPHMM to locate the first contiguous set of 5 matching base pairs (5 sequential 1s) for both the front and the back of the sequence. Sequence information outside of this first set of matches is trimmed (low probability of being true barcode sequence).
Usage
1 | set_frame(org_seq, path_out)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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