chromsearch: Search one chromsome
In colocalized: Clusters of Colocalized Sequences
Description
Usage
Arguments
Value
Examples
Description
Search a single chromosome for clusters of TF binding sequences.
Example produces a null result, test the same complex on "chr9"
for a positive reading.
Usage
1
chromsearch(choose, n, chrom)
Arguments
choose
List of .bed tables
n
Cut-off distance between colocalized sequences
chrom
Chromosome to be searched given as e.g. "chr19"
Value
A table containing the addresses (as one dimensional intervals) of the members of every cluster, with some annotation data.
Examples
1
2
colocalized documentation built on Oct. 30, 2019, 10:49 a.m.
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Description Usage Arguments Value Examples
Description
Search a single chromosome for clusters of TF binding sequences. Example produces a null result, test the same complex on "chr9" for a positive reading.
Usage
1 | chromsearch(choose, n, chrom)
|
Arguments
choose |
List of .bed tables |
n |
Cut-off distance between colocalized sequences |
chrom |
Chromosome to be searched given as e.g. "chr19" |
Value
A table containing the addresses (as one dimensional intervals) of the members of every cluster, with some annotation data.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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