colocalized: Colocalized cluster search.
In colocalized: Clusters of Colocalized Sequences
Description
Usage
Arguments
Value
Examples
Description
Searches for clusters of colocalized transcription factor (TF) binding sequences.
colocalized(choose,chr,n) searches for instances where the sequences from each
table element in choose are colocalized to within a cut-off distance.
Usage
1
colocalized(choose, chr, n, cores)
Arguments
choose
List of .bed tables
chr
Chromosome
n
The cut-off distance
cores
Number of cores for parallel processing. Leaving this blank causes the program to use default (series) processing
Value
Table of clusters found in chr
Examples
1
2
colocalized documentation built on Oct. 30, 2019, 10:49 a.m.
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Description Usage Arguments Value Examples
Description
Searches for clusters of colocalized transcription factor (TF) binding sequences.
colocalized(choose,chr,n) searches for instances where the sequences from each
table element in choose are colocalized to within a cut-off distance.
Usage
1 | colocalized(choose, chr, n, cores)
|
Arguments
choose |
List of .bed tables |
chr |
Chromosome |
n |
The cut-off distance |
cores |
Number of cores for parallel processing. Leaving this blank causes the program to use default (series) processing |
Value
Table of clusters found in chr
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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