| avecRentrez | function to query NCBI database servers using the "rentrex"... |
| badOption | bad argument error handling function |
| c19.fasta.data | function to obtain FASTA sequence of the SARS-CoV-2 virus |
| c19.genomic.data | function to obtain genomic data from SARS-CoV-2019 |
| c19.NP_fasta.data | function to obtain FASTA seqs for nucleotides or proteins... |
| c19.NPs.data | function to obtain data for nucleotides or proteins from... |
| c19.OWID.data | function to read data from OWID repos |
| c19.ptree.data | function to obtain "Tree of complete SARS-CoV-2 Sequences as... |
| c19.refGenome.data | function to obtain sequencing data grom NCBI Reference:... |
| checkGeoLoc | function to check the geographical location |
| chk.TS.data | auxiliary function to check whether a dataset is composed of... |
| confBand | function to draw confidence bands, using generalized moving... |
| consistency.check | function that determines whether there are consistency issues... |
| covid19.Canada.data | function to import data for Canada as reported by Health... |
| covid19dashboard | covid19.analytics explorer dashboard |
| covid19.data | function to read "live" data from reported covid19 cases |
| covid19Explorer | covid19.analytics explorer dashboard |
| covid19.genomic.data | main master (wrapper) function to obtain different types of... |
| covid19.JHU.data | function to read "live" data as reported by JHU's CCSE... |
| covid19.testing.data | function to read data related to covid19 Testing from OWID... |
| covid19.Toronto_city.data | function to import data from the city of Toronto, ON - Canada... |
| covid19.Toronto.data | function to import data from the city of Toronto, ON - Canada... |
| covid19.Toronto_OD.data | function to import data from the city of Toronto, ON - Canada... |
| covid19.URL_csv.data | function to read CSV from URLs or local replicas |
| covid19.US.data | function to read the TimeSeries US detailed data |
| covid19.vaccination | function to read data related to covid19 vaccinations |
| data.checks | function to check for data integrity and data consistency |
| estimateRRs | estimate rolling rates for a given geographical location for... |
| generate.SIR.model | function to generate a simple SIR... |
| gen.glm.model | function to generate models using GLM |
| genModel | function to generate models using Linear Regression "LM" |
| geographicalRegions | function to define continents and its constituent countries |
| getFile | auxiliary function to download files in a protected fashion,... |
| growth.rate | function to compute daily changes and "Growth Rates" per... |
| header | auxiliary fn to print "headers" adn 'titles' |
| header0 | auxiliary fn to print "headers" adn 'titles' |
| integrity.check | function that determines whether there are integrity issues... |
| itrends | function to visualize trends in daily changes in time series... |
| live.map | function to map cases in an interactive map |
| loadLibrary | auxiliary function to check and load an specific set of... |
| log.sc.setup | aux fn to create a log-scale pulldown option in plotly plots |
| movingFn | generic fn that computes the "fn" on a moving window |
| mrollingRates | function to compute a rolling fn (rate) of multiple... |
| mtrends | function to visualize different indicators for trends in... |
| nullify.data | remove inconsistencies from data by removing 'suspicious'... |
| OWID.repos | function to define the OWID repos URLs |
| pandemics.data | function to retrieve historical pandemics data |
| pandemics.loaddata | internal function to retrieve historical data on pandemics |
| plt.SIR.model | function to plot the results from the SIR model fn |
| preProcessingData | auxiliary function to pre-process data per geographical... |
| print | method associated with 'report' objects |
| print.report | function associated to the 'report' object method |
| red.devel.ver | function to redirect users to install devel version from... |
| report.summary | function to summarize the current situation, will download... |
| report.Tor | function to obtain main indicators from Toronto data |
| rollingRate | function to compute a rolling fn of a TS data |
| select.per.loc | auxiliary function to select data based on geographical... |
| set.plt.canvas | auxiliary function to set the graphical layout |
| simple.SIR.ODE | Define an ODE system for a simple SIR model |
| single.trend | function to visualize different indicators for trends in... |
| sweep.SIR.models | function to perform a sweep of models and generate values of... |
| totals.plt | function to plot total number of cases per day for different... |
| tots.per.location | function to compute totals per location |
| X.covid19.genomic.data | function to obtain sequencing data grom NCBI Reference:... |
