c19.genomic.data: function to obtain genomic data from SARS-CoV-2019
In covid19.analytics: Load and Analyze Live Data from the COVID-19 Pandemic
View source: R/covid19_genomic.R
c19.genomic.data R Documentation
function to obtain genomic data from SARS-CoV-2019
Description
function to obtain genomic data from SARS-CoV-2019
Usage
c19.genomic.data(src = "livedata", accOnly = TRUE)
Arguments
src
argument to indicate what sources are going to be used for retrieving the data: "livedata", "repo" or "local"
'livedata' will access NCBI servers to acquire the latest possible data, this may incur in significant longer times
'repo' will access an updated replica of the data from a github repository (faster but not necessarily upto the latest udpates)
'local' will access previously archived records within teh package (fastest but not updated)
accOnly
boolean indicator for getting only accession codes or whole records
Value
a list containing reference genome, annotation data, nucleotides, proteins and list of SRA runs
covid19.analytics documentation built on Oct. 16, 2023, 1:06 a.m.
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View source: R/covid19_genomic.R
| c19.genomic.data | R Documentation |
function to obtain genomic data from SARS-CoV-2019
Description
function to obtain genomic data from SARS-CoV-2019
Usage
c19.genomic.data(src = "livedata", accOnly = TRUE)
Arguments
src |
argument to indicate what sources are going to be used for retrieving the data: "livedata", "repo" or "local" 'livedata' will access NCBI servers to acquire the latest possible data, this may incur in significant longer times 'repo' will access an updated replica of the data from a github repository (faster but not necessarily upto the latest udpates) 'local' will access previously archived records within teh package (fastest but not updated) |
accOnly |
boolean indicator for getting only accession codes or whole records |
Value
a list containing reference genome, annotation data, nucleotides, proteins and list of SRA runs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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