covid19.genomic.data: main master (wrapper) function to obtain different types of...

View source: R/covid19_genomic.R

covid19.genomic.dataR Documentation

main master (wrapper) function to obtain different types of genomic data for the SARS-CoV-2 virus

Description

main master (wrapper) function to obtain different types of genomic data for the SARS-CoV-2 virus

Usage

covid19.genomic.data(
  type = "genome",
  src = "livedata",
  graphics.ON = TRUE,
  accOnly = TRUE
)

Arguments

type

type of data to retrieve, options are: 'genome', 'genomic', 'fasta', 'nucleotide', 'protein', 'ptree'

src

source of the data: "livedata", "repo" or "local"

graphics.ON

boolean option for display associated graphics

accOnly

boolean indicator for getting only accession codes or whole records


covid19.analytics documentation built on Aug. 18, 2022, 9:06 a.m.