avecRentrez: function to query NCBI database servers using the "rentrex"...

View source: R/covid19_genomic.R

avecRentrezR Documentation

function to query NCBI database servers using the "rentrex" library

Description

function to query NCBI database servers using the "rentrex" library

Usage

avecRentrez(
  DB = "nucleotide",
  max.nr.recs = 20000,
  chunkSize = 100,
  accOnly = TRUE
)

Arguments

DB

database

max.nr.recs

maximun number of records to retrieve, there are limitations in the fns and server sides

chunkSize

number of records to retrieve at once

accOnly

boolean indicator for getting only accession codes or whole records


covid19.analytics documentation built on Aug. 18, 2022, 9:06 a.m.