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#' Compute isochrones/isodistances from nodes.
#'
#' @param Graph An object generated by \link{makegraph} or \link{cpp_simplify} function.
#' @param from numeric or character. A vector of one or more vertices from which isochrones/isodistances are calculated.
#' @param lim numeric. A vector of one or multiple breaks.
#' @param setdif logical. If \code{TRUE} and \code{length(lim) > 1}, nodes that are reachable in a given break will not appear in a greater one.
#' @param keep numeric or character. Vertices of interest that will be returned.
#' @param long logical. If \code{TRUE}, a long \code{data.frame} is returned instead of a \code{list}.
#' @return \code{list} or a \code{data.frame} containing reachable nodes below cost limit(s).
#' @note \code{get_isochrone()} recursively perform Dijkstra algorithm for each \code{from} nodes and stop when cost limit is reached.
#' @details If \code{length(lim) > 1}, value is a \code{list} of \code{length(from)}, containing \code{list}s of \code{length(lim)}.
#'
#' All algorithms are \strong{multithreaded.} Please use \code{RcppParallel::setThreadOptions()} to set the number of threads.
#'
#' For large graph, \code{keep} argument can be used for saving memory.
#' @examples
#' #Choose number of cores used by cppRouting
#' RcppParallel::setThreadOptions(numThreads = 1)
#'
#' #Data describing edges of the graph
#' edges<-data.frame(from_vertex=c(0,0,1,1,2,2,3,4,4),
#' to_vertex=c(1,3,2,4,4,5,1,3,5),
#' cost=c(9,2,11,3,5,12,4,1,6))
#'
#' #Construct directed graph
#' directed_graph<-makegraph(edges,directed=TRUE)
#'
#' #Get nodes reachable around node 4 with maximum distances of 1 and 2
#' iso<-get_isochrone(Graph=directed_graph,from = "4",lim=c(1,2))
#'
#' #With setdif set to TRUE
#' iso2<-get_isochrone(Graph=directed_graph,from = "4",lim=c(1,2),setdif=TRUE)
#' print(iso)
#' print(iso2)
get_isochrone<-function(Graph,from,lim,setdif=FALSE,keep=NULL,long=FALSE){
if (length(Graph) != 5) stop("Input should be generated by makegraph() or cpp_simplify() function")
if (any(is.na(from))) stop("NAs are not allowed in origin nodes")
from<-as.character(from)
if (sum(from %in% Graph$dict$ref)<length(from)) stop("Some nodes are not in the graph")
from_id<-Graph$dict$id[match(from,Graph$dict$ref)]
lim<-as.numeric(lim)
if (any(is.na(lim))) stop("NAs are not allowed in cost value(s)")
#Nodes to keep
if (!is.null(keep)) {
to_keep<-rep(0,Graph$nbnode)
keep<-as.character(keep)
to_keep[Graph$dict$ref %in% keep]<-1
}else{
to_keep<-rep(1,Graph$nbnode)
}
if (length(lim) > 1){
lim<-sort(lim)
res <- cpppathmat(Graph$data$from,Graph$data$to,Graph$data$dist,Graph$nbnode,
Graph$dict$ref, to_keep, from_id, c(0,0), lim , setdif, 1, FALSE)
for (i in 1:length(res)) names(res[[i]])<-as.character(lim)
names(res)<-from
if (long){
res<-lapply(res,function(x){
return(stack(setNames(x,names(x))))
})
res<-data.table::rbindlist(res,idcol=TRUE)
res$ind<-as.character(res$ind)
colnames(res)<-c("origin","node","lim")
res<-data.frame(res)
}
}
else {
res <- cpppath(Graph$data$from,Graph$data$to,Graph$data$dist,Graph$nbnode,
c(0,0), c(0,0), 1, Graph$dict$ref, to_keep, from_id, c(0,0), lim , 4)
names(res)<-from
if (long){
res<-stack(setNames(res,names(res)))
res$ind<-as.character(res$ind)
res$lim<-lim
res<-res[,c(2,1,3)]
colnames(res)<-c("origin","node","lim")
}
}
return(res)
}
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