crosstalk_subgraph: Helper function to generate subgraph from crosstalk_df output...

In crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Helper function to generate subgraph from crosstalk_df output of compute_crosstalk

Description

Useful if the user wants to carry out further analysis or design custom visualizations.

Usage

crosstalk_subgraph(crosstalk_df, g, seed_proteins, tg = TRUE)

Arguments

crosstalk_df	a dataframe containing the results of compute_crosstalk
g	igraph network object.
seed_proteins	user defined seed proteins
tg	bool do we want to tidy the graph for plotting?

Value

a tidygraph structure containing information about the crosstalkr subgraph

Examples

## Not run: 
ct_df <- compute_crosstalk(c("EGFR", "KRAS"))
g <- prep_biogrid()
crosstalk_subgraph(ct_df, g = g, seed_proteins = c("EGFR", "KRAS"))

## End(Not run)

crosstalkr documentation built on Sept. 30, 2023, 1:06 a.m.