ppi_intersection: Function to allow users to choose the intersection of...

In crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Function to allow users to choose the intersection of stringdb and biogrid Only works with the human PPI. min_score parameter only applies to strindb

Description

Function to allow users to choose the intersection of stringdb and biogrid Only works with the human PPI. min_score parameter only applies to strindb

Usage

ppi_intersection(cache = NULL, min_score = 800, edb = "default")

Arguments

cache	A filepath to a folder downloaded files should be stored
min_score	minimum connectivity score for each edge in the network.
edb	ensemble database object

Value

igraph object corresponding to PPI following intersection

crosstalkr documentation built on Sept. 30, 2023, 1:06 a.m.