load_ppi: Helper function to load requested PPI w/ parameters

In crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Helper function to load requested PPI w/ parameters

Description

Helper function to load requested PPI w/ parameters

Usage

load_ppi(
  cache = NULL,
  union = FALSE,
  intersection = FALSE,
  species = "9606",
  min_score = 0,
  ppi = "stringdb"
)

Arguments

cache	A filepath to a folder downloaded files should be stored
union	bool
intersection	bool
species	species code either using latin species name or taxon id
min_score	minimum connectivity score for each edge in the network.
ppi	str

Value

igraph object

crosstalkr documentation built on Sept. 30, 2023, 1:06 a.m.