node_repression: Function to eliminate a node from a network g and calculate...

In crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Function to eliminate a node from a network g and calculate the change in some measure of network state

Description

this function is still under development.

Usage

node_repression(
  g,
  v_rm = as.character(names(igraph::V(g))),
  exp,
  state_function = calc_np_all,
  neighbors_only = TRUE,
  ...
)

Arguments

g	igraph network object
v_rm	index of vertices to remove
exp	expression vector for nodes in graph g
state_function	function to use to calculate network state before and after node_repression
neighbors_only	logical designating whether state function should be calculated for all nodes or just neighbors
...	additional parameters passed to state function.

crosstalkr documentation built on Sept. 30, 2023, 1:06 a.m.