Man pages for crso
Cancer Rule Set Optimization ('crso')
| buildRuleLibrary | Make full rule library of all rules that satisfy minimum... |
| evaluateListOfIMs | Evaluate list of rule set matrices |
| getBestRsList | Get list of best rule sets of size K for all K |
| getCoreK | Determine core K from phase 3 tpl and til |
| getCoreRS | Get core rules from phase 3 tpl and til |
| getGCDs | Get Generalized Core Duos |
| getGCEs | Get Generalized Core Events |
| getGCRs | Get Generalized Core Rules |
| getPoolSizes | Get pool sizes for phase 2 |
| getRulesAsStrings | Represent binary rule matrix as strings |
| makeFilteredImList | Make filtered im list from phase 3 im list |
| makePhaseOneOrderedRM | Order rules according to phase one importance ranking |
| makePhaseThreeImList | Make phase 3 im list from phase 2 im list |
| makePhaseTwoImList | Output list of top rule sets for each k in 1:k.max |
| makeSubCoreList | Get list of core rules from random subsets of samples |
| skcm.list | Example data set derived from TCGA skin cutaneous melanoma... |
