buildRuleLibrary: Make full rule library of all rules that satisfy minimum...

In crso: Cancer Rule Set Optimization ('crso')

Description

Make full rule library of all rules that satisfy minimum coverage threshold.

Usage

buildRuleLibrary(D, rule.thresh, min.epr)

Arguments

D	Binary matrix of N events and M samples
rule.thresh	Minimum fraction of rules covered. Default is .03
min.epr	minimum events per rule. Default is 2.

Examples

library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # build rule library
dim(rm.full) # Should be matrix with dimension 60 x 71

crso documentation built on July 7, 2019, 5:02 p.m.