Cancer Rule Set Optimization ('crso')

buildRuleLibrary | Make full rule library of all rules that satisfy minimum... |

evaluateListOfIMs | Evaluate list of rule set matrices |

getBestRsList | Get list of best rule sets of size K for all K |

getCoreK | Determine core K from phase 3 tpl and til |

getCoreRS | Get core rules from phase 3 tpl and til |

getGCDs | Get Generalized Core Duos |

getGCEs | Get Generalized Core Events |

getGCRs | Get Generalized Core Rules |

getPoolSizes | Get pool sizes for phase 2 |

getRulesAsStrings | Represent binary rule matrix as strings |

makeFilteredImList | Make filtered im list from phase 3 im list |

makePhaseOneOrderedRM | Order rules according to phase one importance ranking |

makePhaseThreeImList | Make phase 3 im list from phase 2 im list |

makePhaseTwoImList | Output list of top rule sets for each k in 1:k.max |

makeSubCoreList | Get list of core rules from random subsets of samples |

skcm.list | Example data set derived from TCGA skin cutaneous melanoma... |

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