evaluateListOfIMs: Evaluate list of rule set matrices

In crso: Cancer Rule Set Optimization ('crso')

Description

Evaluate list of rule set matrices

Usage

evaluateListOfIMs(D, Q, rm, im.list)

Arguments

D	binary matrix of events by samples
Q	penalty matrix of events by samples
rm	matrix of rules ordered by phase one
im.list	list of rule set matrices

Value

list of Js for each rule set matrix

Examples

library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
p2.im.list <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),max.stored=100,
              shouldPrint = TRUE)
p2.performance.list <- evaluateListOfIMs(D,Q,rm.full,p2.im.list)

crso documentation built on July 7, 2019, 5:02 p.m.