Description Usage Arguments Value Examples

Evaluate list of rule set matrices

1 | ```
evaluateListOfIMs(D, Q, rm, im.list)
``` |

`D` |
binary matrix of events by samples |

`Q` |
penalty matrix of events by samples |

`rm` |
matrix of rules ordered by phase one |

`im.list` |
list of rule set matrices |

list of Js for each rule set matrix

1 2 3 4 5 6 7 8 | ```
library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
p2.im.list <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),max.stored=100,
shouldPrint = TRUE)
p2.performance.list <- evaluateListOfIMs(D,Q,rm.full,p2.im.list)
``` |

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