getBestRsList: Get list of best rule sets of size K for all K

In crso: Cancer Rule Set Optimization ('crso')

Description

Get list of best rule sets of size K for all K

Usage

getBestRsList(rm, tpl, til)

Arguments

rm	binary rule matrix
tpl	list of top performances
til	list of top rule set index matrices

Examples

library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),
          max.stored=100,shouldPrint = FALSE)
tpl.p2 <- evaluateListOfIMs(D,Q,rm.full,til.p2)
best.rs.list <- getBestRsList(rm = rm.full,tpl = tpl.p2,til = til.p2)

crso documentation built on July 7, 2019, 5:02 p.m.