get_mutation_read_names: Gets names of the reads showing reference and alternative...
In ctDNAtools: Analyze Circulating Tumor DNA Sequencing Data

Extract the names of the reads in a bam file that support the variant allele of a single mutation

1 2	get_mutation_read_names(bam, chr, pos, ref, alt, tag = "", min_base_quality = 20, min_mapq = 30)

`bam`	path to bam file.
`chr`	Chromosome name for the mutation.
`pos`	Chromosome position for the mutation.
`ref`	The reference allele of the mutation.
`alt`	The alternative allele of the mutation.
`tag`	the RG tag if the bam has more than one sample.
`min_base_quality`	integer specifying the minimum base quality for reads to be included.
`min_mapq`	integer specifying the minimum mapping quality for reads to be included.