simulator: A function to sample from binomial distribution
In ctDNAtools: Analyze Circulating Tumor DNA Sequencing Data
Description
Usage
Arguments
Value
See Also
Description
Samples from binomial distribution N variants with different depths and fixed mismatch rate for one simulation. Return 1 if the simulation exceeds observed alt allele reads or 0 otherwise
Usage
1
simulator(depths, rate, alt_reads, seed)
Arguments
depths
a vector with the depths of the variants
rate
A list containing mismatch rates as produced by get_background_rate function
alt_reads
the observed variant allele reads
seed
the random seed
Value
a scalar. Either 1 if the simulation exceeds observed variant alleles or 0 otherwise
See Also
ctDNAtools documentation built on March 26, 2020, 7:39 p.m.
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Description Usage Arguments Value See Also
Description
Samples from binomial distribution N variants with different depths and fixed mismatch rate for one simulation. Return 1 if the simulation exceeds observed alt allele reads or 0 otherwise
Usage
1 | simulator(depths, rate, alt_reads, seed)
|
Arguments
depths |
a vector with the depths of the variants |
rate |
A list containing mismatch rates as produced by get_background_rate function |
alt_reads |
the observed variant allele reads |
seed |
the random seed |
Value
a scalar. Either 1 if the simulation exceeds observed variant alleles or 0 otherwise
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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