ctmm: Continuous-Time Movement Modeling

Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.

Author
Christen H. Fleming and J. M. Calabrese
Date of publication
2016-11-30 02:04:30
Maintainer
C. H. Fleming <flemingc@si.edu>
License
GPL-3
Version
0.3.4

View on CRAN

Man pages

akde
Calculate an autocorrelated kernel density estimate
as.telemetry
Import, coerce, and summarize MoveBank data
bandwidth
Calculate the optimal bandwidth matrix of movement data
buffalo
African buffalo GPS dataset from Kruger National Park, South...
ctmm.fit
Specify, fit, and select continuous-time movement models
ctmm-package
Continuous-time movement modeling
export
Export ctmm data formats
gazelle
Mongolian gazelle GPS dataset from the Mongolia's Eastern...
homerange
Calculate a range distribution estimate
mean.variogram
Compute a number-weighted average of variogram objects
occurrence
Calculate a Kriged occurrence disribution estimate
overlap
Calculate the overlap between two stationary distributions
periodogram
Calculate the Lomb-Scargle periodogram of animal-tracking...
plot.telemetry
Plotting methods for telemetry objects.
plot.variogram
Plotting methods for variogram objects.
simulate.ctmm
Predict or simulate from a continuous-time movement model
summary.ctmm
Summarize a continuous-time movement model
summary.UD
Summarize a range distribution
uere
Estimate UERE from calibration data
variogram
Calculate an empirical variogram from movement data
variogram.fit
Visually fit a movement model to a variogram

Files in this package

ctmm
ctmm/TODO
ctmm/inst
ctmm/inst/doc
ctmm/inst/doc/akde.html
ctmm/inst/doc/variogram.R
ctmm/inst/doc/akde.R
ctmm/inst/doc/akde.Rmd
ctmm/inst/doc/variogram.Rmd
ctmm/inst/doc/variogram.html
ctmm/NAMESPACE
ctmm/NEWS
ctmm/data
ctmm/data/buffalo.rda
ctmm/data/gazelle.rda
ctmm/R
ctmm/R/select.R
ctmm/R/generic.R
ctmm/R/telemetry.R
ctmm/R/variogram.R
ctmm/R/krige.R
ctmm/R/uere.R
ctmm/R/kde.R
ctmm/R/periodogram.R
ctmm/R/optim.R
ctmm/R/ctmm.R
ctmm/R/overlap.R
ctmm/R/likelihood.R
ctmm/R/mean.R
ctmm/vignettes
ctmm/vignettes/akde.Rmd
ctmm/vignettes/variogram.Rmd
ctmm/README.md
ctmm/MD5
ctmm/build
ctmm/build/vignette.rds
ctmm/DESCRIPTION
ctmm/man
ctmm/man/ctmm-package.Rd
ctmm/man/uere.Rd
ctmm/man/buffalo.Rd
ctmm/man/simulate.ctmm.Rd
ctmm/man/variogram.fit.Rd
ctmm/man/ctmm.fit.Rd
ctmm/man/occurrence.Rd
ctmm/man/overlap.Rd
ctmm/man/summary.UD.Rd
ctmm/man/bandwidth.Rd
ctmm/man/plot.telemetry.Rd
ctmm/man/akde.Rd
ctmm/man/export.Rd
ctmm/man/as.telemetry.Rd
ctmm/man/periodogram.Rd
ctmm/man/summary.ctmm.Rd
ctmm/man/variogram.Rd
ctmm/man/mean.variogram.Rd
ctmm/man/homerange.Rd
ctmm/man/gazelle.Rd
ctmm/man/plot.variogram.Rd