ctmm: Continuous-Time Movement Modeling
Version 0.3.6

Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.

AuthorChristen H. Fleming [aut, cre], Justin M. Calabrese [aut], Xianghui Dong [ctb], Kevin Winner [ctb], Guillaume Péron [ctb], Bart Kranstauber [ctb], Eliezer Gurarie [ctb], Kamran Safi [ctb], Paul C. Cross [dtc], Thomas Mueller [dtc]
Date of publication2017-04-24 05:45:55 UTC
MaintainerChristen H. Fleming <flemingc@si.edu>
LicenseGPL-3
Version0.3.6
URL https://github.com/ctmm-initiative/ctmm http://biology.umd.edu/movement.html
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ctmm")

Getting started

Package overview
README.md
Autocorrelated Kernel Density Estimation
Variograms and Model Selection

Popular man pages

akde: Calculate an autocorrelated kernel density estimate
as.telemetry: Import, coerce, and summarize MoveBank data
buffalo: African buffalo GPS dataset from Kruger National Park, South...
ctmm-package: Continuous-time movement modeling
export: Export ctmm data formats
overlap: Calculate the overlap between two stationary distributions
simulate.ctmm: Predict or simulate from a continuous-time movement model
See all...

All man pages Function index File listing

Man pages

akde: Calculate an autocorrelated kernel density estimate
as.telemetry: Import, coerce, and summarize MoveBank data
bandwidth: Calculate the optimal bandwidth matrix of movement data
buffalo: African buffalo GPS dataset from Kruger National Park, South...
ctmm-FAQ: ctmm FAQ
ctmm.fit: Specify, fit, and select continuous-time movement models
ctmm-package: Continuous-time movement modeling
export: Export ctmm data formats
extent: Extent
gazelle: Mongolian gazelle GPS dataset from the Mongolia's Eastern...
homerange: Calculate a range distribution estimate
mean.variogram: Compute a number-weighted average of variogram objects
occurrence: Calculate a Kriged occurrence disribution estimate
overlap: Calculate the overlap between two stationary distributions
periodogram: Calculate the Lomb-Scargle periodogram of animal-tracking...
plot.telemetry: Plotting methods for telemetry objects.
plot.variogram: Plotting methods for variogram objects.
residuals: Calculate model fit residuals and assess their...
simulate.ctmm: Predict or simulate from a continuous-time movement model
summary.ctmm: Summarize a continuous-time movement model
summary.UD: Summarize a range distribution
uere: Estimate UERE from calibration data
variogram: Calculate an empirical variogram from movement data
variogram.fit: Visually fit a movement model to a variogram

Functions

Adj Source code
BhattacharyyaD Source code
CI.UD Source code
COV.covm Source code
DOF.area Source code
DOF.mean Source code
FFT Source code
FFTW Source code
Gauss Source code
Gauss3 Source code
Gram.Schmidt Source code
He Source code
IFFT Source code
Mode Source code
Move2CSV Source code
NewtonCotes Source code
Optimizer Source code
PDclamp Source code
PDfunc Source code
PDsolve Source code
PQP.solve Source code
QuadSolve Source code
QuadTest Source code
SpatialPoints.telemetry Man page Source code
SpatialPolygonsDataFrame.UD Man page Source code
Tsquared Source code
akde Man page Source code
akde.bias Source code
akde.list Man page Source code
akde.telemetry Man page Source code
alpha.ctmm Source code
area2var Source code
as.telemetry Man page Source code
as.telemetry.Move Man page Source code
as.telemetry.MoveStack Source code
as.telemetry.character Man page Source code
as.telemetry.data.frame Man page Source code
assign_speeds Source code
bandwidth Man page Source code
buffalo Man page
cdf2pmf Source code
chisq.ci Source code
ci.tau Source code
color Source code
color.telemetry Source code
composite Source code
conditionNumber Source code
confint.ctmm Source code
continuity Source code
correlogram Man page Source code
cov.loglike Source code
covm Source code
ctmm Man page Source code
ctmm-FAQ Man page
ctmm-package Man page
ctmm.ctmm Source code
ctmm.fit Man page Source code
ctmm.guess Man page Source code
ctmm.loglike Man page Source code
ctmm.prepare Source code
ctmm.repair Source code
ctmm.select Man page Source code
debias.area Source code
debias.volume Source code
det.numeric Source code
determinant.numeric Source code
empty.env Source code
export Man page
extent Man page
extent,UD-method Man page
extent,ctmm-method Man page
extent,list-method Man page
extent,telemetry-method Man page
extent.UD Source code
extent.ctmm Source code
extent.list Source code
extent.telemetry Source code
fill.data Source code
first Source code
gazelle Man page
gcd Source code
gcd.vec Source code
genD Source code
genD.mcDeriv Source code
genD.numDeriv Source code
get.error Source code
get.telemetry Source code
grid.init Source code
gridder Source code
homerange Man page Source code
inside Source code
is.installed Source code
kalman Source code
kde Source code
kde.grid Source code
lag.DOF Source code
langevin Source code
last Source code
line.boxer Source code
lognorm.ci Source code
max.periodogram Source code
mc.min Source code
mc.optim Source code
mean.UD Man page Source code
mean.info Source code
mean.list Source code
mean.variogram Man page Source code
na.replace Source code
name.ctmm Source code
new.plot Source code
norm.ci Source code
occurrence Man page Source code
onLoad Source code
outer Source code
overlap Man page Source code
overlap.UD Source code
overlap.ctmm Man page Source code
overlap.telemetry Man page
pad Source code
pars Source code
pars.covm Source code
pars.tauv Source code
periodic.drift Source code
periodic.init Source code
periodic.name Source code
periodic.omega Source code
periodic.refine Source code
periodic.scale Source code
periodic.speed Source code
periodic.stuff Source code
periodic.summary Source code
periodic.svf Source code
periodogram Man page Source code
periodogram.fast Source code
periodogram.slow Source code
plot Man page
plot.UD Source code
plot.ctmm Source code
plot.df Source code
plot.kde Source code
plot.list Source code
plot.periodogram Man page Source code
plot.svf Source code
plot.telemetry Man page Source code
plot.variogram Man page Source code
pmf2cdf Source code
pnorm1 Source code
pnorm2 Source code
pnorm3 Source code
predict Man page
predict.ctmm Man page Source code
predict.telemetry Man page Source code
pregridder Source code
prepare.H Source code
pull.column Source code
rank1update Source code
raster,UD-method Man page
raster.UD Source code
residuals.ctmm Man page Source code
residuals.telemetry Man page Source code
rm.name Source code
rotate Source code
rpad Source code
setUnits Source code
sigma.construct Source code
sigma.destruct Source code
simulate Man page
simulate.ctmm Man page Source code
simulate.telemetry Man page Source code
smoother Source code
sort.ctmm Source code
speedMLE Source code
sqrtm Source code
stationary.drift Source code
stationary.init Source code
stationary.name Source code
stationary.refine Source code
stationary.scale Source code
stationary.speed Source code
stationary.summary Source code
stationary.svf Source code
subset.periodogram Source code
subset.telemetry Source code
subset.variogram Source code
suggest.projection Source code
summary.UD Man page Source code
summary.ctmm Man page Source code
summary.ctmm.list Source code
summary.ctmm.single Source code
summary.list Source code
summary.telemetry Man page Source code
svf.func Source code
telemetry.clean Source code
temp_unzip Source code
time_res Source code
uere Man page Source code
unit Source code
unit.UD Source code
unit.ctmm Source code
unit.telemetry Source code
uspline.drift Source code
uspline.init Source code
uspline.name Source code
uspline.refine Source code
uspline.scale Source code
uspline.speed Source code
uspline.stuff Source code
validate.projection Source code
variogram Man page Source code
variogram.dt Source code
variogram.fast Source code
variogram.fit Man page Source code
variogram.guess Source code
variogram.slow Source code
writeRaster,UD,character-method Man page
writeRaster.UD Source code
writeShapefile Man page Source code
writeShapefile.UD Man page Source code
zoom,UD-method Man page
zoom,list-method Man page
zoom,telemetry-method Man page
zoom,variogram-method Man page
zoom.list Source code
zoom.telemetry Source code
zoom.variogram Source code

Files

TODO
inst
inst/doc
inst/doc/akde.html
inst/doc/variogram.R
inst/doc/akde.R
inst/doc/akde.Rmd
inst/doc/variogram.Rmd
inst/doc/variogram.html
NAMESPACE
NEWS.md
data
data/buffalo.rda
data/gazelle.rda
R
R/select.R
R/generic.R
R/1.R
R/numDeriv.R
R/filter.R
R/acf.R
R/telemetry.R
R/variogram.R
R/krige.R
R/uere.R
R/temp_unzip.R
R/kde.R
R/periodogram.R
R/extent.R
R/optim.R
R/export.R
R/units.R
R/ctmm.R
R/overlap.R
R/color.R
R/likelihood.R
R/QP.R
R/matrix.R
R/mean.R
vignettes
vignettes/akde.Rmd
vignettes/variogram.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ctmm-FAQ.Rd
man/ctmm-package.Rd
man/uere.Rd
man/buffalo.Rd
man/simulate.ctmm.Rd
man/residuals.Rd
man/variogram.fit.Rd
man/extent.Rd
man/ctmm.fit.Rd
man/occurrence.Rd
man/overlap.Rd
man/summary.UD.Rd
man/bandwidth.Rd
man/plot.telemetry.Rd
man/akde.Rd
man/export.Rd
man/as.telemetry.Rd
man/periodogram.Rd
man/summary.ctmm.Rd
man/variogram.Rd
man/mean.variogram.Rd
man/homerange.Rd
man/gazelle.Rd
man/plot.variogram.Rd
ctmm documentation built on May 19, 2017, 1:09 p.m.

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