intensity | R Documentation |
This function plots the empirical and theoretical intensity functions with respect to a covariate of interest.
intensity(data,UD,RSF,R=list(),variable=NULL,empirical=FALSE,level=0.95,ticks=TRUE,
smooth=TRUE,interpolate=TRUE,...)
data |
A |
UD |
A |
RSF |
An iRSF model-fit object from |
R |
A named list of rasters or time-varying raster stacks [NOT TESTED] to fit Poisson regression coefficients to (under a log link). |
variable |
Variable of interest from |
empirical |
Plot an empirical estimate of |
level |
Confidence level for intensity function estimates. |
ticks |
Demark used resource values atop the plot. |
smooth |
Apply location-error smoothing to the tracking data before regression. |
interpolate |
Whether or not to interpolate raster values during extraction. |
... |
Arguments passed to |
With resepct to the Poisson point process likelihood L(\lambda)=\frac{\lambda(x,y)}{\iint \lambda(x',y') \, dx' dy'}
, the formula
object of a ctmm iRSF model corresponds to the covariate dependence of \log(\lambda)
, which is typically of the form \boldsymbol{\beta} \cdot \mathbf{R}
. intensity
plots both empirical (black) and theoretical (red) estimates of the log-intensity (or log-selection) function \log(\lambda)
as a function of the covariate variable
, which provides a visualization of what the true formula
looks like and how the fitted model compares. The empirical estimate is semi-parametric, in that it assumes that RSF
is correct for all variables other than variable
.
Only relative differences in \log(\lambda)
are meaningful.
rsf.fit
.
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