c1_io: Cedric IO Utilities

In cubfits: Codon Usage Bias Fits

Description

This utility function provides basic IO by Cedric.

Usage

  readGenome(fn.genome, ex.sh.aa = 0, rm.first.aa = 0)
  
  normalizeDataSet(data)

Arguments

fn.genome	Fasta file with sequences
ex.sh.aa	Ignore sequences with a length less than ex.sh.aa. (After removal of the first rm.first.aa amino acids)
rm.first.aa	Remove the first rm.first.aa amino acids (after start codon)
data	Vector to be normalized. Means will be set to 1

Details

under development

Value

under development

Author(s)

Cedric Landerer [e-mail].

References

https://github.com/clandere/cubfits/

See Also

under development

Examples

  ## Not run: 
    library(cubfits)
    seq.string <- readGenome("my_genome.fasta", 150, 10)
  
## End(Not run)

cubfits documentation built on Nov. 8, 2021, 1:07 a.m.