yy_yassour_PM: Posterior Results of Yassour 2009 Yeast Experiment Dataset

In cubfits: Codon Usage Bias Fits

Description

Output summarized from MCMC posterior results analyzing Yassour 2009 data.

Usage

  yassour.PM.fits
  yassour.PM.appr
  yassour.info

Format

These are list's containing several posterior means: E.Phi for expected expression, b.InitList.roc for parameters, AA.prob for proportion of amino acids, sigmaW for standard error of measure errors, and gene.length for gene length.

Details

yassour.PM.fits and yassour.PM.appr are the MCMC output of with/without observed expression, respectively. Both contain posterior means of expected expressions and coefficient parameters: E.Phi and b.InitList.roc are scaled results such that each MCMC iteration has mean 1 at E.Phi.

yassour.info contains sequences information (Yeast): AA.prob and gene.length are summarized from corresponding genes in the analysis.

Note that some of genes may not have good quality of expression or sequence information, so those genes are dropped from yassour dataset.

References

https://github.com/snoweye/cubfits/

See Also

yassour

Examples

## Not run: 
str(yassour.PM.fits)
str(yassour.PM.appr)
str(yassour.PM.info)

## End(Not run)

cubfits documentation built on Nov. 8, 2021, 1:07 a.m.