u3_rearrange: Rearrange Data Structure by ORF Names
In cubfits: Codon Usage Bias Fits

Description Usage Arguments Details Value Author(s) References See Also Examples

These utility functions rearrange data in the order of ORF names.

  rearrange.reu13.df(reu13.df)
  rearrange.y(y)
  rearrange.n(n)
  rearrange.phi.Obs(phi.Obs)

`reu13.df`	a list of `reu13.df` data frames divided by amino acids.
`y`	a list of `y` data frames divided by amino acids.
`n`	a list of `n` vectors divided by amino acids.
`phi.Obs`	a vector of `phi.Obs` format.

These utility functions take inputs and return ordered outputs. It is necessary to rearrange data in a right order of ORF names which avoids subsetting data frame within MCMC and improve performance.

The outputs are in the same format of inputs except the order of data is sorted by ORF names.

Wei-Chen Chen wccsnow@gmail.com.

https://github.com/snoweye/cubfits/

AllDataFormats, convert.n.to.list(), convert.reu13.df.to.list(), and convert.y.to.list().

## Not run: 
suppressMessages(library(cubfits, quietly = TRUE))

reu13.df <- rearrange.reu13.df(ex.train$reu13.df)
y <- rearrange.y(ex.train$y)
n <- rearrange.n(ex.train$n)
phi.Obs <- rearrange.phi.Obs(ex.train$phi.Obs)

## End(Not run)