Convert Data Frame to Other Formats

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Description

These utility functions convert data of format divided by amino acids into list of format divided by ORFs, or convert data to other formats.

Usage

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Arguments

reu13.df

a list of reu13.df data frames divided by amino acids.

y

a list of y data frames divided by amino acids.

n

a list of n vectors divided by amino acids.

seq.data

a vector of seq.data format.

x

a codon or dna string, such "ACG", "acg", or "A", "a".

b

a b object.

bVec

a bVec object.

aa.names

a vector contains amino acid names for analysis.

model

model fitted.

Details

convert.reu13.df.to.list(), convert.y.to.list(), and convert.n.to.list(): these utility functions take the inputs divided by amino acids and return the outputs divided by ORFs.

convert.y.scuo() converts y into scuo format.

convert.seq.data.to.string() converts seq.data into seq.string format.

codon.low2up() and codon.up2low() convert codon strings between lower or upper cases.

convert.bVec.to.b() and convert.b.to.bVec() convert objects b and bVec.

Value

All functions return the corresponding formats.

Author(s)

Wei-Chen Chen wccsnow@gmail.com.

References

https://github.com/snoweye/cubfits/

See Also

AllDataFormats, rearrange.n(), rearrange.reu13.df(), rearrange.y(), and read.seq().

Examples

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