dave: Functions for "Data Analysis in Vegetation Ecology"
Version 1.5

A collection of functions accompanying the book "Data Analysis in Vegetation Ecology", Second edition. 2013, Wiley-Blackwell, Chichester

AuthorOtto Wildi
Date of publication2014-08-05 07:49:55
MaintainerOtto Wildi <otto.wildi@wsl.ch>
LicenseLGPL (>= 2.0)
Version1.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dave")

Getting started

Package overview

Popular man pages

aocc: Analysis of concentration (AOC)
centroid: Centroids of row groups (vegetation releves)
fitmarkov: Approximating a Markov chain
outlier: Outlier detection
pcaser: Connecting time series in ordinations
pcovar: Plotting 6 variants of principal coordinates analysis
srank: Ranking species by IndVal or F-value
See all...

All man pages Function index File listing

Man pages

aocc: Analysis of concentration (AOC)
ccost: Cost function of 2 alternative classifications of rows in...
centroid: Centroids of row groups (vegetation releves)
dave-package: Data Analysis in Vegetation Ecology
davesil: Modified version of silhouette plotting
dircor: Directional mantel correlation
EKs: Swiss forest vegetation data base 1972, site information
EKv: Swiss forest vegetation data base 1972, vegetation...
fitmarkov: Approximating a Markov chain
fspa: Flexible shortest path adjustment
ltim: Lippe et al. 1985 data set, yr of observation
lveg: Lippe et al. 1985 data set, vegetation data
Mtabs: Structuring vegetation data tables
mveg: Ellenberg's 1956 meadow data
mxplot: Matrixplot of groups similarities
nsit: European beach forest data, site factors
nveg: European beach forest data, vegetation
orank: Ranking by orthogonal components (RANK)
outlier: Outlier detection
overly: Overly of multivariate time series
pcaser: Connecting time series in ordinations
pcobiplot: Computing and plotting a biplot ordination using principal...
pcovar: Plotting 6 variants of principal coordinates analysis
psit: Time scale (yr) for Soppensee pollen data
pveg: Soppensee pollen data
sn59sit: Time series from the Swiss National Park, 59 plots. Site...
sn59veg: Time series from the Swiss National Park, 59 plots....
sn6sit: Time series from the Swiss National Park, 6 plots. Site data.
sn6veg: Time series from the Swiss National Park, 6 plots. Vegetation...
SNPsm: The spatial and temporal model of succession in the Swiss...
SNPtm: The temporal model of succession in the Swiss National Park
speedprof: Plotting velocity profiles of multivariate time series
srank: Ranking species by IndVal or F-value
ssind: Indicator values of all species in data set "sveg"
ssit: Schlaenggli site data
sspft: Selected plant functional traits of all species in data set...
sveg: Schlaenggli vegetation data
tsit: Time series from the Swiss National Park, Plot Tr6. Site...
tveg: Time series from the Swiss National Park, Plot Tr6....
vvelocity: Printing ordinations of velocity and acceleration and...
wetsit: Random sample of Swiss wetland vegetation, site information.
wetveg: Random sample of Swiss wetland vegetation, vegetation...
ws200: Four kilometre grid forest data of Switzerland, 200m2 plots
ws30: Four kilometre grid forest data of Switzerland, 30m2 plots
ws500: Four kilometre grid forest data of Switzerland, 500m2 plots
wssit: Four kilometre grid forest data of Switzerland, site...

Functions

EKs Man page
EKv Man page
Mtabs Man page Source code
Mtabs.default Man page Source code
SNPsm Man page Source code
SNPsm.default Man page Source code
SNPsm2 Man page Source code
SNPtm Man page Source code
SNPtm.default Man page Source code
SNPtm2 Man page Source code
aoc Man page Source code
aocc Man page Source code
aocc.default Man page Source code
ccost Man page Source code
ccost.default Man page Source code
ccost2 Man page Source code
centroid Man page Source code
centroid.default Man page Source code
dave Man page Man page
davesil Man page Source code
davesil.default Man page Source code
dircor Man page Source code
dircor.default Man page Source code
dircor2 Man page Source code
dsil Man page Source code
fitmarkov Man page Source code
fitmarkov.default Man page Source code
fspa Man page Source code
fspa.default Man page Source code
fspa2 Man page Source code
ltim Man page
lveg Man page
matrixplot Man page Source code
mtab Man page Source code
mveg Man page
mxplot Man page Source code
mxplot.default Man page Source code
nsit Man page
nveg Man page
orank Man page Source code
orank.default Man page Source code
orank1 Man page Source code
outlier Man page Source code
outlier.default Man page Source code
outly Man page Source code
overly Man page Source code
overly.default Man page Source code
overly2 Man page Source code
pcaser Man page Source code
pcaser.default Man page Source code
pcaser2 Man page Source code
pcoatest Man page Source code
pcobiplot Man page Source code
pcobiplot.default Man page Source code
pcocoor Man page Source code
pcovar Man page Source code
pcovar.default Man page Source code
plot.Mtabs Man page Source code
plot.SNPsm Man page Source code
plot.SNPtm Man page Source code
plot.aocc Man page Source code
plot.davesil Man page Source code
plot.dircor Man page Source code
plot.fitmarkov Man page Source code
plot.fspa Man page Source code
plot.mxplot Man page Source code
plot.orank Man page Source code
plot.outlier Man page Source code
plot.overly Man page Source code
plot.pcaser Man page Source code
plot.pcobiplot Man page Source code
plot.pcovar Man page Source code
plot.speedprof Man page Source code
plot.vvelocity Man page Source code
plottab Man page Source code
plottabl Man page Source code
print.ccost Man page Source code
print.centroid Man page Source code
print.outlier Man page Source code
print.srank Man page Source code
psit Man page
pveg Man page
rcentroid Man page Source code
rfitmarkov Man page Source code
setgroupsize Man page Source code
sn59sit Man page
sn59veg Man page
sn6sit Man page
sn6veg Man page
speedprof Man page Source code
speedprof.default Man page Source code
speedprof2 Man page Source code
srank Man page Source code
srank.default Man page Source code
srank2 Man page Source code
ssind Man page
ssit Man page
sspft Man page
summary.Mtabs Man page Source code
summary.orank Man page Source code
sveg Man page
tsit Man page
tveg Man page
vvelocity Man page Source code
vvelocity.default Man page Source code
vvelocity2 Man page Source code
wetsit Man page
wetveg Man page
ws200 Man page
ws30 Man page
ws500 Man page
wssit Man page

Files

NAMESPACE
data
data/sspft.rda
data/wetsit.rda
data/tveg.rda
data/ltim.rda
data/ssit.rda
data/sn59veg.rda
data/mveg.rda
data/EKs.rda
data/ws30.rda
data/wetveg.rda
data/ws200.rda
data/ws500.rda
data/lveg.rda
data/sn6sit.rda
data/pveg.rda
data/sn59sit.rda
data/EKv.rda
data/nveg.rda
data/psit.rda
data/sn6veg.rda
data/tsit.rda
data/ssind.rda
data/nsit.rda
data/sveg.rda
data/wssit.rda
R
R/pcovar.R
R/plot.overly.R
R/SNPtm2.R
R/dircor.R
R/plot.SNPsm.R
R/fspa2.R
R/plot.vvelocity.R
R/mxplot.R
R/plot.SNPtm.R
R/vvelocity.R
R/fspa.R
R/outlier.R
R/orank.R
R/plot.speedprof.R
R/plot.aocc.R
R/ccost.R
R/summary.Mtabs.R
R/SNPsm.R
R/pcobiplot.R
R/centroid.default.R
R/setgroupsize.R
R/rfitmarkov.R
R/SNPtm.default.R
R/plot.outlier.R
R/pcoatest.R
R/srank2.R
R/plot.dircor.R
R/SNPtm.R
R/Mtabs.default.R
R/pcaser.R
R/plot.mxplot.R
R/mtab.R
R/SNPsm.default.R
R/vvelocity.default.R
R/ccost.default.R
R/plot.pcobiplot.R
R/plot.orank.R
R/plot.fitmarkov.R
R/davesil.R
R/fitmarkov.R
R/speedprof2.R
R/rcentroid.R
R/dircor2.R
R/orank.default.R
R/pcocoor.R
R/davesil.default.R
R/plot.davesil.R
R/pcovar.default.R
R/plot.fspa.R
R/plot.pcaser.R
R/ccost2.R
R/print.ccost.R
R/matrixplot.R
R/fitmarkov.default.R
R/pcaser2.R
R/aoc.R
R/srank.R
R/Mtabs.R
R/aocc.R
R/summary.orank.R
R/mxplot.default.R
R/dircor.default.R
R/speedprof.R
R/centroid.R
R/outlier.default.R
R/pcaser.default.R
R/overly.default.R
R/srank.default.R
R/speedprof.default.R
R/plottab.R
R/fspa.default.R
R/orank1.R
R/outly.R
R/aocc.default.R
R/print.outlier.R
R/SNPsm2.R
R/dsil.R
R/overly2.R
R/plot.Mtabs.R
R/plottabl.R
R/pcobiplot.default.R
R/vvelocity2.R
R/plot.pcovar.R
R/print.srank.R
R/overly.R
R/print.centroid.R
MD5
DESCRIPTION
man
man/pcobiplot.Rd
man/wetsit.Rd
man/orank.Rd
man/mveg.Rd
man/sn59veg.Rd
man/srank.Rd
man/ws30.Rd
man/aocc.Rd
man/SNPsm.Rd
man/ltim.Rd
man/fspa.Rd
man/sveg.Rd
man/sn6veg.Rd
man/vvelocity.Rd
man/EKs.Rd
man/lveg.Rd
man/ssit.Rd
man/wetveg.Rd
man/ccost.Rd
man/psit.Rd
man/ws500.Rd
man/Mtabs.Rd
man/outlier.Rd
man/speedprof.Rd
man/nveg.Rd
man/sn6sit.Rd
man/SNPtm.Rd
man/ws200.Rd
man/overly.Rd
man/tveg.Rd
man/ssind.Rd
man/tsit.Rd
man/mxplot.Rd
man/davesil.Rd
man/dircor.Rd
man/pcovar.Rd
man/pveg.Rd
man/wssit.Rd
man/pcaser.Rd
man/dave-package.Rd
man/EKv.Rd
man/sspft.Rd
man/centroid.Rd
man/nsit.Rd
man/sn59sit.Rd
man/fitmarkov.Rd
dave documentation built on May 19, 2017, 3:45 p.m.

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