dave: Functions for "Data Analysis in Vegetation Ecology"

A collection of functions accompanying the book "Data Analysis in Vegetation Ecology", Second edition. 2013, Wiley-Blackwell, Chichester

Author
Otto Wildi
Date of publication
2014-08-05 07:49:55
Maintainer
Otto Wildi <otto.wildi@wsl.ch>
License
LGPL (>= 2.0)
Version
1.5

View on CRAN

Man pages

aocc
Analysis of concentration (AOC)
ccost
Cost function of 2 alternative classifications of rows in...
centroid
Centroids of row groups (vegetation releves)
dave-package
Data Analysis in Vegetation Ecology
davesil
Modified version of silhouette plotting
dircor
Directional mantel correlation
EKs
Swiss forest vegetation data base 1972, site information
EKv
Swiss forest vegetation data base 1972, vegetation...
fitmarkov
Approximating a Markov chain
fspa
Flexible shortest path adjustment
ltim
Lippe et al. 1985 data set, yr of observation
lveg
Lippe et al. 1985 data set, vegetation data
Mtabs
Structuring vegetation data tables
mveg
Ellenberg's 1956 meadow data
mxplot
Matrixplot of groups similarities
nsit
European beach forest data, site factors
nveg
European beach forest data, vegetation
orank
Ranking by orthogonal components (RANK)
outlier
Outlier detection
overly
Overly of multivariate time series
pcaser
Connecting time series in ordinations
pcobiplot
Computing and plotting a biplot ordination using principal...
pcovar
Plotting 6 variants of principal coordinates analysis
psit
Time scale (yr) for Soppensee pollen data
pveg
Soppensee pollen data
sn59sit
Time series from the Swiss National Park, 59 plots. Site...
sn59veg
Time series from the Swiss National Park, 59 plots....
sn6sit
Time series from the Swiss National Park, 6 plots. Site data.
sn6veg
Time series from the Swiss National Park, 6 plots. Vegetation...
SNPsm
The spatial and temporal model of succession in the Swiss...
SNPtm
The temporal model of succession in the Swiss National Park
speedprof
Plotting velocity profiles of multivariate time series
srank
Ranking species by IndVal or F-value
ssind
Indicator values of all species in data set "sveg"
ssit
Schlaenggli site data
sspft
Selected plant functional traits of all species in data set...
sveg
Schlaenggli vegetation data
tsit
Time series from the Swiss National Park, Plot Tr6. Site...
tveg
Time series from the Swiss National Park, Plot Tr6....
vvelocity
Printing ordinations of velocity and acceleration and...
wetsit
Random sample of Swiss wetland vegetation, site information.
wetveg
Random sample of Swiss wetland vegetation, vegetation...
ws200
Four kilometre grid forest data of Switzerland, 200m2 plots
ws30
Four kilometre grid forest data of Switzerland, 30m2 plots
ws500
Four kilometre grid forest data of Switzerland, 500m2 plots
wssit
Four kilometre grid forest data of Switzerland, site...

Files in this package

dave
dave/NAMESPACE
dave/data
dave/data/sspft.rda
dave/data/wetsit.rda
dave/data/tveg.rda
dave/data/ltim.rda
dave/data/ssit.rda
dave/data/sn59veg.rda
dave/data/mveg.rda
dave/data/EKs.rda
dave/data/ws30.rda
dave/data/wetveg.rda
dave/data/ws200.rda
dave/data/ws500.rda
dave/data/lveg.rda
dave/data/sn6sit.rda
dave/data/pveg.rda
dave/data/sn59sit.rda
dave/data/EKv.rda
dave/data/nveg.rda
dave/data/psit.rda
dave/data/sn6veg.rda
dave/data/tsit.rda
dave/data/ssind.rda
dave/data/nsit.rda
dave/data/sveg.rda
dave/data/wssit.rda
dave/R
dave/R/pcovar.R
dave/R/plot.overly.R
dave/R/SNPtm2.R
dave/R/dircor.R
dave/R/plot.SNPsm.R
dave/R/fspa2.R
dave/R/plot.vvelocity.R
dave/R/mxplot.R
dave/R/plot.SNPtm.R
dave/R/vvelocity.R
dave/R/fspa.R
dave/R/outlier.R
dave/R/orank.R
dave/R/plot.speedprof.R
dave/R/plot.aocc.R
dave/R/ccost.R
dave/R/summary.Mtabs.R
dave/R/SNPsm.R
dave/R/pcobiplot.R
dave/R/centroid.default.R
dave/R/setgroupsize.R
dave/R/rfitmarkov.R
dave/R/SNPtm.default.R
dave/R/plot.outlier.R
dave/R/pcoatest.R
dave/R/srank2.R
dave/R/plot.dircor.R
dave/R/SNPtm.R
dave/R/Mtabs.default.R
dave/R/pcaser.R
dave/R/plot.mxplot.R
dave/R/mtab.R
dave/R/SNPsm.default.R
dave/R/vvelocity.default.R
dave/R/ccost.default.R
dave/R/plot.pcobiplot.R
dave/R/plot.orank.R
dave/R/plot.fitmarkov.R
dave/R/davesil.R
dave/R/fitmarkov.R
dave/R/speedprof2.R
dave/R/rcentroid.R
dave/R/dircor2.R
dave/R/orank.default.R
dave/R/pcocoor.R
dave/R/davesil.default.R
dave/R/plot.davesil.R
dave/R/pcovar.default.R
dave/R/plot.fspa.R
dave/R/plot.pcaser.R
dave/R/ccost2.R
dave/R/print.ccost.R
dave/R/matrixplot.R
dave/R/fitmarkov.default.R
dave/R/pcaser2.R
dave/R/aoc.R
dave/R/srank.R
dave/R/Mtabs.R
dave/R/aocc.R
dave/R/summary.orank.R
dave/R/mxplot.default.R
dave/R/dircor.default.R
dave/R/speedprof.R
dave/R/centroid.R
dave/R/outlier.default.R
dave/R/pcaser.default.R
dave/R/overly.default.R
dave/R/srank.default.R
dave/R/speedprof.default.R
dave/R/plottab.R
dave/R/fspa.default.R
dave/R/orank1.R
dave/R/outly.R
dave/R/aocc.default.R
dave/R/print.outlier.R
dave/R/SNPsm2.R
dave/R/dsil.R
dave/R/overly2.R
dave/R/plot.Mtabs.R
dave/R/plottabl.R
dave/R/pcobiplot.default.R
dave/R/vvelocity2.R
dave/R/plot.pcovar.R
dave/R/print.srank.R
dave/R/overly.R
dave/R/print.centroid.R
dave/MD5
dave/DESCRIPTION
dave/man
dave/man/pcobiplot.Rd
dave/man/wetsit.Rd
dave/man/orank.Rd
dave/man/mveg.Rd
dave/man/sn59veg.Rd
dave/man/srank.Rd
dave/man/ws30.Rd
dave/man/aocc.Rd
dave/man/SNPsm.Rd
dave/man/ltim.Rd
dave/man/fspa.Rd
dave/man/sveg.Rd
dave/man/sn6veg.Rd
dave/man/vvelocity.Rd
dave/man/EKs.Rd
dave/man/lveg.Rd
dave/man/ssit.Rd
dave/man/wetveg.Rd
dave/man/ccost.Rd
dave/man/psit.Rd
dave/man/ws500.Rd
dave/man/Mtabs.Rd
dave/man/outlier.Rd
dave/man/speedprof.Rd
dave/man/nveg.Rd
dave/man/sn6sit.Rd
dave/man/SNPtm.Rd
dave/man/ws200.Rd
dave/man/overly.Rd
dave/man/tveg.Rd
dave/man/ssind.Rd
dave/man/tsit.Rd
dave/man/mxplot.Rd
dave/man/davesil.Rd
dave/man/dircor.Rd
dave/man/pcovar.Rd
dave/man/pveg.Rd
dave/man/wssit.Rd
dave/man/pcaser.Rd
dave/man/dave-package.Rd
dave/man/EKv.Rd
dave/man/sspft.Rd
dave/man/centroid.Rd
dave/man/nsit.Rd
dave/man/sn59sit.Rd
dave/man/fitmarkov.Rd