sveg: Schlaenggli vegetation data

Description Usage Format Source References Examples

Description

Schlaenggli vegetation data. 63 plots arranged in a square grid. Site factors in data frame ssit.

Usage

1

Format

A data frame with 63 observations on 119 species as variables. Species abundance measured on a 0 to 6 scale.

Source

Wildi, O. 1977. Beschreibung exzentrischer Hochmoore mit Hilfe quantitativer Methoden. Veroeff. Geobot. Inst. ETH, Stiftung Ruebel 60: 128S.

References

Wildi, O. 2017. Data Analysis in Vegetation Ecology. 3rd ed. CABI, Oxfordshire, Boston.

Examples

1

Example output

Loading required package: cluster
Loading required package: labdsv
Loading required package: mgcv
Loading required package: nlme
This is mgcv 1.8-33. For overview type 'help("mgcv-package")'.
This is labdsv 2.0-1
convert existing ordinations with as.dsvord()

Attaching package:labdsvThe following object is masked frompackage:stats:

    density

Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-7
Loading required package: nnet

Attaching package:nnetThe following object is masked frompackage:mgcv:

    multinom

Loading required package: tree
 Vaccinium.myrtillus Vaccinium.uliginosum Vaccinium.oxycoccos Calluna.vulgaris
 Min.   :0.0000      Min.   :0.0000       Min.   :0.0000      Min.   :0.0000  
 1st Qu.:0.0000      1st Qu.:0.0000       1st Qu.:0.0000      1st Qu.:0.0000  
 Median :0.0000      Median :0.0000       Median :0.0000      Median :0.0000  
 Mean   :0.1905      Mean   :0.2063       Mean   :0.5079      Mean   :0.3333  
 3rd Qu.:0.0000      3rd Qu.:0.0000       3rd Qu.:1.0000      3rd Qu.:1.0000  
 Max.   :1.0000      Max.   :2.0000       Max.   :2.0000      Max.   :3.0000  
 Carex.rostrata    Carex.lasiocarpa  Carex.nigra     Carex.davalliana
 Min.   :0.00000   Min.   :0.0000   Min.   :0.0000   Min.   :0.0000  
 1st Qu.:0.00000   1st Qu.:1.0000   1st Qu.:0.0000   1st Qu.:0.0000  
 Median :0.00000   Median :1.0000   Median :1.0000   Median :0.0000  
 Mean   :0.07937   Mean   :0.9365   Mean   :0.6667   Mean   :0.4444  
 3rd Qu.:0.00000   3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.0000  
 Max.   :2.00000   Max.   :2.0000   Max.   :2.0000   Max.   :2.0000  
 Carex.hostiana   Carex.pauciflora  Carex.echinata  Carex.panicea   
 Min.   :0.0000   Min.   :0.00000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.00000   1st Qu.:0.500   1st Qu.:0.0000  
 Median :0.0000   Median :0.00000   Median :1.000   Median :1.0000  
 Mean   :0.2698   Mean   :0.03175   Mean   :1.317   Mean   :0.6349  
 3rd Qu.:0.0000   3rd Qu.:0.00000   3rd Qu.:2.000   3rd Qu.:1.0000  
 Max.   :2.0000   Max.   :1.00000   Max.   :3.000   Max.   :2.0000  
 Trichophorum.caespitosum Trichophorum.alpinum Eriophorum.vaginatum
 Min.   :0.000            Min.   :0.0000       Min.   :0.0000      
 1st Qu.:1.000            1st Qu.:0.0000       1st Qu.:0.0000      
 Median :1.000            Median :0.0000       Median :0.0000      
 Mean   :1.413            Mean   :0.4762       Mean   :0.1587      
 3rd Qu.:2.000            3rd Qu.:1.0000       3rd Qu.:0.0000      
 Max.   :3.000            Max.   :2.0000       Max.   :2.0000      
 Eriophorum.latifolium Eriophorum.angustifolium Tofieldia.calyculata
 Min.   :0.000         Min.   :0.0000           Min.   :0.0000      
 1st Qu.:0.000         1st Qu.:1.0000           1st Qu.:0.0000      
 Median :0.000         Median :1.0000           Median :0.0000      
 Mean   :0.254         Mean   :0.8413           Mean   :0.3968      
 3rd Qu.:0.000         3rd Qu.:1.0000           3rd Qu.:1.0000      
 Max.   :2.000         Max.   :2.0000           Max.   :1.0000      
 Pinguicula.vulgaris Parnassia.palustris Rhynchospora.alba Drosera.rotundifolia
 Min.   :0.000       Min.   :0.0000      Min.   :0.00000   Min.   :0.0000      
 1st Qu.:0.000       1st Qu.:0.0000      1st Qu.:0.00000   1st Qu.:0.0000      
 Median :0.000       Median :0.0000      Median :0.00000   Median :1.0000      
 Mean   :0.381       Mean   :0.3968      Mean   :0.03175   Mean   :0.8095      
 3rd Qu.:1.000       3rd Qu.:1.0000      3rd Qu.:0.00000   3rd Qu.:1.0000      
 Max.   :2.000       Max.   :1.0000      Max.   :1.00000   Max.   :2.0000      
 Arnica.montana   Dactylorhiza.maculata Polytrichum.strictum Succisa.pratensis
 Min.   :0.0000   Min.   :0.000         Min.   :0.0000       Min.   :0.0000   
 1st Qu.:0.0000   1st Qu.:0.000         1st Qu.:0.0000       1st Qu.:0.0000   
 Median :0.0000   Median :1.000         Median :0.0000       Median :1.0000   
 Mean   :0.6984   Mean   :0.746         Mean   :0.4127       Mean   :0.7143   
 3rd Qu.:1.0000   3rd Qu.:1.000         3rd Qu.:1.0000       3rd Qu.:1.0000   
 Max.   :3.0000   Max.   :2.000         Max.   :3.0000       Max.   :1.0000   
 Anthoxanthum.odoratum Molinia.caerulea Gentiana.asclepiadea Luzula.multiflora
 Min.   :0.0000        Min.   :0.00     Min.   :0.0000       Min.   :0.0000   
 1st Qu.:0.0000        1st Qu.:1.00     1st Qu.:1.0000       1st Qu.:0.0000   
 Median :1.0000        Median :1.00     Median :1.0000       Median :0.0000   
 Mean   :0.6349        Mean   :1.19     Mean   :0.7937       Mean   :0.1905   
 3rd Qu.:1.0000        3rd Qu.:1.00     3rd Qu.:1.0000       3rd Qu.:0.0000   
 Max.   :1.0000        Max.   :2.00     Max.   :2.0000       Max.   :1.0000   
 Festuca.rubra    Potentilla.erecta Sphagnum.magellanicum Sphagnum.papillosum
 Min.   :0.0000   Min.   :0.000     Min.   :0.000         Min.   :0.0000     
 1st Qu.:0.0000   1st Qu.:1.000     1st Qu.:0.000         1st Qu.:0.0000     
 Median :1.0000   Median :1.000     Median :1.000         Median :1.0000     
 Mean   :0.5397   Mean   :1.286     Mean   :1.016         Mean   :0.9206     
 3rd Qu.:1.0000   3rd Qu.:2.000     3rd Qu.:1.000         3rd Qu.:1.0000     
 Max.   :1.0000   Max.   :2.000     Max.   :5.000         Max.   :5.0000     
 Equisetum.palustre Aulacomnium.palustre Euphrasia.rostkoviana Nardus.stricta  
 Min.   :0.000      Min.   :0.000        Min.   :0.0000        Min.   :0.0000  
 1st Qu.:1.000      1st Qu.:1.000        1st Qu.:0.0000        1st Qu.:0.0000  
 Median :1.000      Median :1.000        Median :0.0000        Median :1.0000  
 Mean   :1.079      Mean   :1.095        Mean   :0.3968        Mean   :0.6349  
 3rd Qu.:1.000      3rd Qu.:1.000        3rd Qu.:1.0000        3rd Qu.:1.0000  
 Max.   :3.000      Max.   :3.000        Max.   :2.0000        Max.   :2.0000  
 Carex.pulicaris Climacium.dendroides Carex.pallescens Carex.lepidocarpa
 Min.   :0.000   Min.   :0.0000       Min.   :0.0000   Min.   :0.000    
 1st Qu.:0.000   1st Qu.:0.0000       1st Qu.:0.0000   1st Qu.:0.000    
 Median :0.000   Median :0.0000       Median :0.0000   Median :0.000    
 Mean   :0.381   Mean   :0.5397       Mean   :0.1746   Mean   :0.127    
 3rd Qu.:1.000   3rd Qu.:1.0000       3rd Qu.:0.0000   3rd Qu.:0.000    
 Max.   :2.000   Max.   :3.0000       Max.   :1.0000   Max.   :1.000    
  Briza.media    Sphagnum.platyphyllum Sphagnum.tenellum Sphagnum.recurvum
 Min.   :0.000   Min.   :0.0000        Min.   :0.00000   Min.   :0.000    
 1st Qu.:0.000   1st Qu.:0.0000        1st Qu.:0.00000   1st Qu.:0.000    
 Median :0.000   Median :0.0000        Median :0.00000   Median :1.000    
 Mean   :0.381   Mean   :0.2381        Mean   :0.06349   Mean   :1.571    
 3rd Qu.:1.000   3rd Qu.:0.0000        3rd Qu.:0.00000   3rd Qu.:2.500    
 Max.   :1.000   Max.   :3.0000        Max.   :1.00000   Max.   :6.000    
 Sphagnum.rubellum Sphagnum.centrale Sphagnum.subsecundum
 Min.   :0.000     Min.   :0.00000   Min.   :0.0000      
 1st Qu.:0.000     1st Qu.:0.00000   1st Qu.:0.0000      
 Median :1.000     Median :0.00000   Median :0.0000      
 Mean   :1.222     Mean   :0.03175   Mean   :0.8254      
 3rd Qu.:2.000     3rd Qu.:0.00000   3rd Qu.:1.0000      
 Max.   :6.000     Max.   :1.00000   Max.   :6.0000      
 Juncus.alpinoarticulatus Solidago.virgaurea Agrostis.canina  Juncus.effusus  
 Min.   :0.0000           Min.   :0.0000     Min.   :0.0000   Min.   :0.0000  
 1st Qu.:0.0000           1st Qu.:0.0000     1st Qu.:0.0000   1st Qu.:0.0000  
 Median :0.0000           Median :0.0000     Median :0.0000   Median :0.0000  
 Mean   :0.2857           Mean   :0.2381     Mean   :0.3968   Mean   :0.1429  
 3rd Qu.:1.0000           3rd Qu.:0.0000     3rd Qu.:1.0000   3rd Qu.:0.0000  
 Max.   :1.0000           Max.   :2.0000     Max.   :1.0000   Max.   :1.0000  
 Frangula.alnus   Anemone.nemorosa Holcus.lanatus   Drepanocladus.exannulatus
 Min.   :0.0000   Min.   :0.0000   Min.   :0.0000   Min.   :0.00000          
 1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.00000          
 Median :0.0000   Median :1.0000   Median :0.0000   Median :0.00000          
 Mean   :0.4921   Mean   :0.6032   Mean   :0.2063   Mean   :0.04762          
 3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:0.0000   3rd Qu.:0.00000          
 Max.   :2.0000   Max.   :2.0000   Max.   :1.0000   Max.   :1.00000          
 Homogyne.alpina   Polygala.vulgaris Trollius.europaeus Polygonum.bistorta
 Min.   :0.00000   Min.   :0.0000    Min.   :0.0000     Min.   :0.00000   
 1st Qu.:0.00000   1st Qu.:0.0000    1st Qu.:0.0000     1st Qu.:0.00000   
 Median :0.00000   Median :0.0000    Median :0.0000     Median :0.00000   
 Mean   :0.04762   Mean   :0.1905    Mean   :0.3333     Mean   :0.06349   
 3rd Qu.:0.00000   3rd Qu.:0.0000    3rd Qu.:1.0000     3rd Qu.:0.00000   
 Max.   :2.00000   Max.   :1.0000    Max.   :1.0000     Max.   :2.00000   
 Lotus.pedunculatus Trifolium.pratense Taraxacum.palustre Campylium.stellatum
 Min.   :0.00000    Min.   :0.0000     Min.   :0.0000     Min.   :0.0000     
 1st Qu.:0.00000    1st Qu.:0.0000     1st Qu.:0.0000     1st Qu.:0.0000     
 Median :0.00000    Median :0.0000     Median :0.0000     Median :0.0000     
 Mean   :0.06349    Mean   :0.2063     Mean   :0.3333     Mean   :0.5079     
 3rd Qu.:0.00000    3rd Qu.:0.0000     3rd Qu.:1.0000     3rd Qu.:1.0000     
 Max.   :2.00000    Max.   :1.0000     Max.   :1.0000     Max.   :5.0000     
 Cirsium.palustre Lysimachia.vulgaris Maianthemum.bifolium Equisetum.sylvaticum
 Min.   :0.0000   Min.   :0.0000      Min.   :0.000        Min.   :0.0000      
 1st Qu.:0.0000   1st Qu.:0.0000      1st Qu.:0.000        1st Qu.:0.0000      
 Median :0.0000   Median :0.0000      Median :1.000        Median :0.0000      
 Mean   :0.1429   Mean   :0.4603      Mean   :0.619        Mean   :0.1587      
 3rd Qu.:0.0000   3rd Qu.:1.0000      3rd Qu.:1.000        3rd Qu.:0.0000      
 Max.   :1.0000   Max.   :1.0000      Max.   :2.000        Max.   :1.0000      
 Centaurea.jacea  Prunella.grandiflora Viola.palustris  Angelica.sylvestris
 Min.   :0.0000   Min.   :0.0000       Min.   :0.0000   Min.   :0.00000    
 1st Qu.:0.0000   1st Qu.:0.0000       1st Qu.:0.0000   1st Qu.:0.00000    
 Median :0.0000   Median :0.0000       Median :0.0000   Median :0.00000    
 Mean   :0.2857   Mean   :0.2063       Mean   :0.3333   Mean   :0.03175    
 3rd Qu.:0.5000   3rd Qu.:0.0000       3rd Qu.:1.0000   3rd Qu.:0.00000    
 Max.   :2.0000   Max.   :1.0000       Max.   :2.0000   Max.   :1.00000    
 Filipendula.ulmaria Thuidium.delicatulum Sanguisorba.officinalis
 Min.   :0.0000      Min.   :0.0000       Min.   :0.00000        
 1st Qu.:0.0000      1st Qu.:0.0000       1st Qu.:0.00000        
 Median :0.0000      Median :1.0000       Median :0.00000        
 Mean   :0.1111      Mean   :0.6508       Mean   :0.04762        
 3rd Qu.:0.0000      3rd Qu.:1.0000       3rd Qu.:0.00000        
 Max.   :2.0000      Max.   :4.0000       Max.   :1.00000        
 Galium.uliginosum Epipactis.palustris Pleurozium.schreberi
 Min.   :0.0000    Min.   :0.0000      Min.   :0.000       
 1st Qu.:0.0000    1st Qu.:0.0000      1st Qu.:0.000       
 Median :0.0000    Median :0.0000      Median :0.000       
 Mean   :0.2857    Mean   :0.1905      Mean   :0.619       
 3rd Qu.:1.0000    3rd Qu.:0.0000      3rd Qu.:1.000       
 Max.   :1.0000    Max.   :1.0000      Max.   :6.000       
 Calliergon.stramineum Aster.bellidiastrum Hypnum.bambergeri
 Min.   :0.000         Min.   :0.0000      Min.   :0.0000   
 1st Qu.:0.000         1st Qu.:0.0000      1st Qu.:0.0000   
 Median :1.000         Median :0.0000      Median :0.0000   
 Mean   :0.619         Mean   :0.2698      Mean   :0.4762   
 3rd Qu.:1.000         3rd Qu.:0.0000      3rd Qu.:1.0000   
 Max.   :2.000         Max.   :2.0000      Max.   :5.0000   
 Drepanocladus.revolvens Dicranum.bonjeanii Dicranum.scoparium
 Min.   :0.0000          Min.   :0.0000     Min.   :0.00000   
 1st Qu.:0.0000          1st Qu.:0.0000     1st Qu.:0.00000   
 Median :0.0000          Median :0.0000     Median :0.00000   
 Mean   :0.1587          Mean   :0.4127     Mean   :0.07937   
 3rd Qu.:0.0000          3rd Qu.:1.0000     3rd Qu.:0.00000   
 Max.   :3.0000          Max.   :1.0000     Max.   :1.00000   
 Hylocomium.splendens Rhytidiadelphus.squarrosus Calliergonella.cuspidata
 Min.   :0.000        Min.   :0.0000             Min.   :0.000           
 1st Qu.:0.000        1st Qu.:0.0000             1st Qu.:0.000           
 Median :1.000        Median :0.0000             Median :0.000           
 Mean   :1.063        Mean   :0.4444             Mean   :0.127           
 3rd Qu.:1.000        3rd Qu.:1.0000             3rd Qu.:0.000           
 Max.   :5.000        Max.   :2.0000             Max.   :1.000           
 Fissidens.adianthoides Primula.veris   Primula.farinosa  Hieracium.lachenalii
 Min.   :0.000          Min.   :0.000   Min.   :0.00000   Min.   :0.0000      
 1st Qu.:0.000          1st Qu.:0.000   1st Qu.:0.00000   1st Qu.:0.0000      
 Median :0.000          Median :0.000   Median :0.00000   Median :1.0000      
 Mean   :0.127          Mean   :0.127   Mean   :0.09524   Mean   :0.6508      
 3rd Qu.:0.000          3rd Qu.:0.000   3rd Qu.:0.00000   3rd Qu.:1.0000      
 Max.   :1.000          Max.   :1.000   Max.   :1.00000   Max.   :1.0000      
 Crepis.paludosa  Leontodon.hispidus Lotus.corniculatus Stachys.officinalis
 Min.   :0.0000   Min.   :0.0000     Min.   :0.0000     Min.   :0.0000     
 1st Qu.:0.0000   1st Qu.:0.0000     1st Qu.:0.0000     1st Qu.:0.0000     
 Median :0.0000   Median :0.0000     Median :0.0000     Median :0.0000     
 Mean   :0.2381   Mean   :0.2063     Mean   :0.1905     Mean   :0.1587     
 3rd Qu.:0.0000   3rd Qu.:0.0000     3rd Qu.:0.0000     3rd Qu.:0.0000     
 Max.   :1.0000   Max.   :1.0000     Max.   :1.0000     Max.   :1.0000     
  Carex.flacca    Gentiana.verna    Geranium.sylvaticum Ranunculus.nemorosus
 Min.   :0.0000   Min.   :0.00000   Min.   :0.00000     Min.   :0.000       
 1st Qu.:0.0000   1st Qu.:0.00000   1st Qu.:0.00000     1st Qu.:0.000       
 Median :0.0000   Median :0.00000   Median :0.00000     Median :0.000       
 Mean   :0.1111   Mean   :0.03175   Mean   :0.04762     Mean   :0.381       
 3rd Qu.:0.0000   3rd Qu.:0.00000   3rd Qu.:0.00000     3rd Qu.:1.000       
 Max.   :1.0000   Max.   :1.00000   Max.   :1.00000     Max.   :1.000       
 Linum.catharticum Cirsium.oleraceum Colchicum.autumnale Polygala.amarella
 Min.   :0.000     Min.   :0.00000   Min.   :0.00000     Min.   :0.00000  
 1st Qu.:0.000     1st Qu.:0.00000   1st Qu.:0.00000     1st Qu.:0.00000  
 Median :0.000     Median :0.00000   Median :0.00000     Median :0.00000  
 Mean   :0.127     Mean   :0.03175   Mean   :0.03175     Mean   :0.04762  
 3rd Qu.:0.000     3rd Qu.:0.00000   3rd Qu.:0.00000     3rd Qu.:0.00000  
 Max.   :1.000     Max.   :1.00000   Max.   :1.00000     Max.   :1.00000  
 Polygala.serpyllifolia Equisetum.arvense Deschampsia.cespitosa
 Min.   :0.00000        Min.   :0.0000    Min.   :0.00000      
 1st Qu.:0.00000        1st Qu.:0.0000    1st Qu.:0.00000      
 Median :0.00000        Median :0.0000    Median :0.00000      
 Mean   :0.03175        Mean   :0.2063    Mean   :0.06349      
 3rd Qu.:0.00000        3rd Qu.:0.0000    3rd Qu.:0.00000      
 Max.   :1.00000        Max.   :1.0000    Max.   :1.00000      
 Rhinanthus.minor  Gymnadenia.conopsea Melampyrum.pratense  Salix.spec.     
 Min.   :0.00000   Min.   :0.0000      Min.   :0.00000     Min.   :0.00000  
 1st Qu.:0.00000   1st Qu.:0.0000      1st Qu.:0.00000     1st Qu.:0.00000  
 Median :0.00000   Median :0.0000      Median :0.00000     Median :0.00000  
 Mean   :0.06349   Mean   :0.1429      Mean   :0.03175     Mean   :0.03175  
 3rd Qu.:0.00000   3rd Qu.:0.0000      3rd Qu.:0.00000     3rd Qu.:0.00000  
 Max.   :1.00000   Max.   :1.0000      Max.   :1.00000     Max.   :1.00000  
 Caltha.palustris  Dactylorhiza.fistulosa Platanthera.bifolia
 Min.   :0.00000   Min.   :0.00000        Min.   :0.00000    
 1st Qu.:0.00000   1st Qu.:0.00000        1st Qu.:0.00000    
 Median :0.00000   Median :0.00000        Median :0.00000    
 Mean   :0.04762   Mean   :0.06349        Mean   :0.09524    
 3rd Qu.:0.00000   3rd Qu.:0.00000        3rd Qu.:0.00000    
 Max.   :1.00000   Max.   :1.00000        Max.   :1.00000    
 Acer.pseudoplatanus Danthonia.decumbens Drepanocladus.spec. Tomentypnum.nitens
 Min.   :0.00000     Min.   :0.00000     Min.   :0.00000     Min.   :0.00000   
 1st Qu.:0.00000     1st Qu.:0.00000     1st Qu.:0.00000     1st Qu.:0.00000   
 Median :0.00000     Median :0.00000     Median :0.00000     Median :0.00000   
 Mean   :0.06349     Mean   :0.06349     Mean   :0.03175     Mean   :0.03175   
 3rd Qu.:0.00000     3rd Qu.:0.00000     3rd Qu.:0.00000     3rd Qu.:0.00000   
 Max.   :1.00000     Max.   :1.00000     Max.   :1.00000     Max.   :1.00000   
 Ctenidium.molluscum
 Min.   :0.00000    
 1st Qu.:0.00000    
 Median :0.00000    
 Mean   :0.03175    
 3rd Qu.:0.00000    
 Max.   :1.00000    

dave documentation built on May 2, 2019, 1:30 p.m.