Description Objects from the Class Slots Methods Author(s) See Also Examples
The representation of a graph for dynamicGraph. Vertices, blocks, viewType, edges, etc. are here the dynamicGraph objects.
Objects can be created by calls of the form new("dg.graphedges", ...)
.
viewType
:Object of class "character"
with the type of view.
visibleVertices
:Object of class "numeric"
:
Numeric vector of the indices of the vertices of
vertexList
to plot.
visibleBlocks
:Object of class "numeric"
:
Numeric vector of the indices of the blocks of
blockList
to plot.
oriented
:Object of class "logical"
:
If TRUE (or FALSE) then edges are oriented (or not),
also when blocks are missing.
If NA then the edges are directed according to the blocks
of the edge.
edgeList
:Object of class "dg.VertexEdgeList"
:
List of edges (of class containing dg.Edge
)
created by returnEdgeList
or exported from dynamicGraphMain
.
blockEdgeList
:Object of class "dg.BlockEdgeList"
:
List of blockedges
(of class containing the class dg.BlockEdge
)
created by returnBlockEdgeList
or exported from dynamicGraphMain
.
factorVertexList
:Object of class
"dg.FactorVertexList"
:
List of secondary vertices,
called factor vertices, for, e.g., the generators of the model,
(each of class containing dg.FactorVertex
)
created by returnFactorVerticesAndEdges
or exported from dynamicGraphMain
.
factorEdgeList
:Object of
class "dg.FactorEdgeList"
:
List of bipartite graph edges, called factor edges,
(each of class containing dg.FactorEdge
)
created by the function returnFactorEdgeList
or exported from dynamicGraphMain
.
Factor edges are edges between vertices and factor vertices.
extraList
:Object of class "dg.VertexList"
:
List of vertices (of class containing the class dg.Vertex
)
created by the function returnVertexList
or exported from the function dynamicGraphMain
,
for, e.g., additional titles in the plot.
extraEdgeList
:Object of class "dg.ExtraEdgeList"
:
List of edges between extra vertices and vertices.
signature(object = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
signature(x = "dg.graphedges")
: ...
signature(object = "dg.graphedges")
: ...
Jens Henrik Badsberg
dg.simple.graph-class
, dg.graph-class
,
and dynamicGraphMain
.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 | # The use of "addModel" and "addModel"
# in the example "usermenus" of demo:
your.DrawModel <- function(object, slave = FALSE, viewType = "Simple", ...) {
dots <- list(...)
localArguments <- dots$Arguments
# Here you should make your new model.
# A copy is made by the following:
ModelObject <- object
title <- ModelObject@name
# and compute graph edges:
dgEdges <- graphEdges(ModelObject, viewType, Arguments = localArguments)
show(dgEdges)
if (slave) {
# Drawing ''an other model'' in a new window:
addModel(dgEdges,
frameModels = localArguments$frameModels,
modelObject = ModelObject,
modelObjectName = ModelObject@name)
}
else {
# Overwriting with ''an other model'' in same view:
replaceModel(dgEdges,
frameModels = localArguments$frameModels,
modelIndex = localArguments$modelIndex,
viewIndex = localArguments$viewIndex,
modelObject = ModelObject,
modelObjectName = ModelObject@name)
}
}
your.LabelAllEdges <- function(object, slave = FALSE, ...)
{
dots <- list(...)
localArguments <- dots$Arguments
dg <- localArguments$dg
# browser()
getNodeName <- function(index, type)
if (type == "Vertex")
name(localArguments$frameModel@vertices[[index]])
else if (type == "Factor")
name(localArguments$dg@factorVertexList[[abs(index)]])
else if (type == "Extra")
name(localArguments$dg@extraList[[abs(index)]])
else if (type == "Block")
label(localArguments$dg@blockList[[abs(index)]])
else
NULL
visitEdges <- function(edges) {
for (i in seq(along = edges)) {
vertices <- nodeIndicesOfEdge(edges[[i]])
types <- nodeTypesOfEdge(edges[[i]])
name.f <- getNodeName(vertices[1], types[1])
name.t <- getNodeName(vertices[2], types[2])
R <- testEdge(object, action = "remove",
name.1 = name.f, name.2 = name.t,
from = vertices[1], to = vertices[2],
from.type = types[1], to.type = types[2],
edge.index = i, force = force, Arguments = localArguments)
if (!is.null(R)) {
if (TRUE || (hasMethod("label", class(R))))
label(edges[[i]]) <- label(R)
if (TRUE || (hasMethod("width", class(R))))
width(edges[[i]]) <- width(R)
}
}
return(edges)
}
dg@edgeList <- visitEdges(dg@edgeList)
dg@factorEdgeList <- visitEdges(dg@factorEdgeList)
dg@blockEdgeList <- visitEdges(dg@blockEdgeList)
if (slave) {
# Drawing ''an other model'' in a new window:
addModel(dg,
frameModels = localArguments$frameModels,
modelObject = localArguments$object,
modelObjectName = localArguments$object@name)
}
else {
# Overwriting with ''an other model'' in same view:
replaceModel(dg,
frameModels = localArguments$frameModels,
frameViews = localArguments$frameViews,
graphWindow = localArguments$graphWindow,
modelObject = localArguments$object,
modelObjectName = localArguments$object@name)
}
}
test.function <- function(...) print("Test.Function")
test.function <- function(...) print(list(...)$Arguments$object@name)
Menus <-
list(MainUser =
list(label =
"Transformation by 'prcomp' on position of \"vertices\", and redraw",
command = function(object, ...) {
localArguments <- list(...)$Arguments
transformation <-
t(prcomp(Positions(localArguments$vertexList))$rotation)
control <- localArguments$control
control$transformation <- transformation
replaceControls(control,
frameModels = localArguments$frameModels,
modelIndex = localArguments$modelIndex,
viewIndex = localArguments$viewIndex,
Arguments = localArguments)
}),
MainUser =
list(label = "Position of \"vertices\" by 'cmdscale', and redraw",
command = function(object, ...) {
localArguments <- list(...)$Arguments
Vertices <- localArguments$dg@vertexList
Edges <- localArguments$dg@edgeList
positions <- Positions(localArguments$dg@vertexList)
N <- dim(positions)[2]
e <- NodeIndices(Edges)
n <- Names(Vertices)
X <- matrix(rep(-1, length(n)^2), ncol = length(n))
for (i in 1:length(e)) {
suppressWarnings(w <- as.numeric(names(e)[i]))
if (is.na(w)) w <- .5
X[e[[i]][1], e[[i]][2]] <- w
X[e[[i]][2], e[[i]][1]] <- w
}
dimnames(X) <- list(n, n)
d <- 1.25
X[X==-1] <- d
X <- X - d * diag(length(n))
mdsX <- cmdscale(X, k = N, add = TRUE, eig = TRUE, x.ret = TRUE)
# mdsX <- isoMDS(X, k = N)
M <- max(abs(mdsX$points))
Positions(localArguments$dg@vertexList) <<- mdsX$points / M * 45
# replaceVertexList(localArguments$vertexList,
# frameModels = localArguments$frameModels,
# modelIndex = localArguments$modelIndex,
# viewIndex = localArguments$viewIndex,
# Arguments = localArguments)
vertices(localArguments$frameModels) <-
localArguments$dg@vertexList
}),
MainUser =
list(label = "Position of \"vertices\"",
command = function(object, ...)
print(Positions(list(...)$Arguments$vertexList))),
MainUser =
list(label = "Label all edges, in this window",
command = function(object, ...)
your.LabelAllEdges(object, slave = FALSE, ...)),
MainUser =
list(label = "Label all edges, in slave window",
command = function(object, ...)
your.LabelAllEdges(object, slave = TRUE, ...)),
MainUser =
list(label = "Draw model, in this window",
command = function(object, ...)
your.DrawModel(object, slave = FALSE, ...)),
MainUser =
list(label = "Draw model, in slave window",
command = function(object, ...)
your.DrawModel(object, slave = TRUE, ...)),
MainUser =
list(label = "Call of function 'modalDialog', result on 'title' at top",
command = function(object, ...)
{
localArguments <- list(...)$Arguments
ReturnVal <- modalDialog("Test modalDialog Entry",
"Enter name",
localArguments$control$title,
top = localArguments$top)
print(ReturnVal)
if (ReturnVal == "ID_CANCEL")
return()
tktitle(localArguments$top) <- ReturnVal
}
),
MainUser =
list(label =
"Call of function 'test.function', result on 'viewLabel' at bottom",
command = function(object, ...)
{
localArguments <- list(...)$Arguments
tkconfigure(localArguments$viewLabel,
text = paste(localArguments$dg@viewType, " | ",
test.function(...))) } ),
MainUser =
list(label =
"Test of 'Arguments'",
command = function(object, ...)
{
dots <- list(...)
localArguments <- list(...)$Arguments
print(names(dots))
print(names(localArguments))
# Only the nine values
# "frameModels", "modelIndex", "viewIndex",
# "object", "objectName",
# "selectedNodes", "selectedEdges",
# "closedBlock", and "hiddenBlock "
# should be extracted from "list(...)$Arguments":
frameModels <- localArguments$frameModels
modelIndex <- localArguments$modelIndex
viewIndex <- localArguments$viewIndex
object <- localArguments$object
objectName <- localArguments$objectName
selectedNodes <- localArguments$selectedNodes
selectedEdges <- localArguments$selectedEdges
closedBlock <- localArguments$closedBlock
hiddenBlock <- localArguments$hiddenBlock
# "control" can alse be extracted from "framModels"
Control <- localArguments$control
control <- frameModels@control
# These 3 are 'deprecated':
drawModel <- localArguments$drawModel #
redrawView <- localArguments$redrawView #
envir <- localArguments$envir #
# The following are currently retained in "list(...)$Arguments",
# but can be extracted from the above teen values:
frameViews <- frameModels@models[[modelIndex]]
graphWindow <- frameViews@graphs[[viewIndex]]
vertexList <- frameModels@vertices
blockList <- frameModels@blocks
dg <- graphWindow@dg
visibleVertices <- visibleVertices(dg)
visibleBlocks <- visibleBlocks(dg)
edgeList <- edgeList(dg)
oriented <- oriented(dg)
blockEdgeList <- blockEdgeList(dg)
factorVertexList <- factorVertexList(dg)
factorEdgeList <- factorEdgeList(dg)
extraList <- extraList(dg)
extraEdgeList <- extraEdgeList(dg)
viewType <- viewType(dg)
top <- top(graphWindow)
box <- vbox(graphWindow)
canvas <- canvas(graphWindow)
viewLabel <- viewLabel(graphWindow)
tags <- tags(graphWindow)
# The values now in 'control' are no longer
# avaliable in "list(...)$Arguments":
title <- control$label # bad example since the
# name "title" has been
# change to "label".
vertexColor <- control$vertexColor
print(names(control))
browser()
} ),
Vertex =
list(label = "Test of user popup menu for vertices: Label",
command = function(object, name, ...)
{
# print(name)
dots <- list(...)
# print(names(dots))
# print(c(dots$type))
# print(c(dots$index))
localArguments <- dots$Arguments
# print(names(localArguments))
# str(localArguments$selectedNodes)
# str(localArguments$selectedEdges)
print(localArguments$dg@vertexList[[dots$index]]@label)
}
),
Edge =
list(label = "Test of user popup menu for edges: Class",
command = function(object, name1, name2, ...)
{
dots <- list(...)
localArguments <- dots$Arguments
# print(c(name1, name2))
# print(c(dots$edge.index, dots$which.edge, dots$from, dots$to))
# print(c(dots$from.type, dots$to.type, dots$edge.type))
# print(names(localArguments))
# str(localArguments$selectedNodes)
# str(localArguments$selectedEdges)
ReturnVal <- selectDialog("Test selectDialog Entry",
"Select name",
localArguments$control$edgeClasses[,1],
top = localArguments$top)
print(ReturnVal)
if (ReturnVal == "ID_CANCEL")
return()
if ((dots$from > 0) && (dots$to > 0)) {
dg <- localArguments$dg
class(dg@edgeList[[dots$edge.index]]) <-
localArguments$control$edgeClasses[ReturnVal, 2]
# replaceView ?
replaceModel(dg,
frameModels = localArguments$frameModels,
modelIndex = localArguments$modelIndex,
viewIndex = localArguments$viewIndex,
modelObject = localArguments$object,
modelObjectName = localArguments$objectName)
}
}
),
ClosedBlock =
list(label = "Test of user popup menu for blocks",
command = function(object, name, ...)
{
print(name)
print(c(list(...)$index))
}
)
)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.