API for erah
Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics
| Global functions | |
|---|---|
| .onAttach | Source code |
| MetaboSet-class | Man page |
| RawDataParameters-class | Man page |
| align.factors | Source code |
| alignComp | Man page |
| alignComp,MetaboSet-method | Man page |
| alignList | Man page |
| alignList,MetaboSet-method | Man page |
| avoid.processing | Source code |
| break.vector | Source code |
| chrom.isoreg | Source code |
| comp.clusters | Source code |
| compInfo | Man page Source code |
| computeRIerror | Man page Source code |
| convertMSPspectra | Source code |
| convertMSPspectra.dot | Source code |
| create.factorlist.table | Source code |
| createInstrumentalTable | Man page Source code |
| createPhenoTable | Man page Source code |
| createdt | Man page Source code |
| dataList | Man page |
| dataList,MetaboSet-method | Man page |
| deconvolveComp | Man page |
| deconvolveComp,MetaboSet-method | Man page |
| eRah_DB-class | Man page |
| expClasses | Man page |
| expClasses,MetaboSet-method | Man page |
| export2CEF | Man page |
| export2MSP | Man page Source code |
| findComp | Man page Source code |
| fit.model.in.data.tosd | Source code |
| get.compound.info_GMD | Source code |
| get.compound.info_MSP | Source code |
| get.factor.list | Source code |
| get.max.sign | Source code |
| get.nrowcol | Source code |
| get.spectra.matrix | Source code |
| getC.rq | Source code |
| getC.tP | Source code |
| getS.OSD | Source code |
| idList | Man page |
| idList,MetaboSet-method | Man page |
| identify.factors | Source code |
| identifyComp | Man page |
| identifyComp,MetaboSet-method | Man page |
| importGMD | Man page Source code |
| importMSP | Man page Source code |
| is.even | Source code |
| lagFFT | Source code |
| list.DB | Source code |
| load.erahrd | Source code |
| load.file | Source code |
| load.ncdf4 | Source code |
| load.xml | Source code |
| metaData | Man page |
| metaData,MetaboSet-method | Man page |
| mslib | Man page |
| newExp | Man page |
| paste.sp | Source code |
| phenoData | Man page |
| phenoData,MetaboSet-method | Man page |
| plan | Man page |
| plotAlign | Man page |
| plotAlign,MetaboSet-method | Man page |
| plotChr | Man page |
| plotChr,MetaboSet-method | Man page |
| plotProfile | Man page |
| plotProfile,MetaboSet-method | Man page |
| plotSpectra | Man page |
| plotSpectra,MetaboSet-method | Man page |
| pre.process | Source code |
| processSample | Source code |
| recMissComp | Man page |
| recMissComp,MetaboSet-method | Man page |
| reexports | Man page |
| refine.extraction | Source code |
| runningmean | Source code |
| runningmin | Source code |
| sampleInfo | Man page |
| sampleInfo,MetaboSet-method | Man page |
| scansPerSecond | Source code |
| setAlPar | Man page Source code |
| setDBinMemory | Source code |
| setDecPar | Man page Source code |
| show,MetaboSet-method | Man page |
| showRTRICurve | Man page Source code |
| sparse.to.vector | Source code |
