idList: Identification list
In erah: Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics

idList

R Documentation

Identification list

The list of identified metabolites in a given experiment

idList(object, id.database = mslib)

## S4 method for signature 'MetaboSet'
idList(object, id.database = mslib)

`object`	A 'MetaboSet' S4 object containing the experiment data. The experiment has to be previously deconvolved, aligned and identified.
`id.database`	The mass-spectra library to be compared with the empirical spectra. By default, the MassBank - Mass Bank of North America (MoNa) database are employed (mslib object).

Returns an identification table containing the names, match scores, and other variables for a given experiment.

idList returns an S3 object:

`AlignID`	The unique Tag for found metabolite by eRah. Each metabolite found by eRah for a given experiment has an unique AlignID tag number.
`tmean`	The mean compound retention time.
`Name.X`	the name of the Xst/nd/rd... hit. idList return as many X (hits) as n.putative selected with `identifyComp`.
`FoundIn`	The number of samples in which the compound has been detected (the number of samples where the compound area is non-zero).
`MatchFactor.X`	The match factor/score of spectral similarity (spectral correlation).
`DB.Id.X`	The identification number of the library. Each metbolite in the reference library has a different DB.Id number.
`CAS.X`	the CAS number of each identified metabolite.