plotProfile: Plotting chromatographic profile

In erah: Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics

Plotting chromatographic profile

Description

Plots the chromatophic profiles of the compounds found by eRah.

Usage

plotProfile(Experiment,AlignId, per.class = T, xlim = NULL, cols=NULL)

## S4 method for signature 'MetaboSet'
plotProfile(Experiment, AlignId, per.class = T, xlim = NULL, cols = NULL)

Arguments

Experiment	A 'MetaboSet' S4 object containing the experiment after being deconolved, aligned and (optionally) identified.
AlignId	the Id identificator for the compound to be shown.
per.class	logical. if TRUE (by default) the profiles are shown one color per class, if FALSE one color per sample.
xlim	x axsis (retention time) limits (see plot.default).
cols	vector of colors. Colors are used cyclically.

Author(s)

Xavier Domingo-Almenara. [e-mail]

See Also

plotSpectra plotAlign

erah documentation built on June 22, 2024, 11:01 a.m.