plotAlign: Plotting chromatographic profile with and without alignment

plotAlignR Documentation

Plotting chromatographic profile with and without alignment

Description

Plots the chromatophic profiles of the compounds found by eRah. Similarly to plotProfile, but with two sub-windows, showing the chromatophic profiles before and after alignment.

Usage

plotAlign(Experiment,AlignId, per.class = T, xlim = NULL)

## S4 method for signature 'MetaboSet'
plotAlign(Experiment, AlignId, per.class = T, xlim = NULL)

Arguments

Experiment

A 'MetaboSet' S4 object containing the experiment after being deconolved, aligned and (optionally) identified.

AlignId

the Id identificator for the compound to be shown.

per.class

logical. if TRUE the profiles are shown one color per class, if FALSE one color per sample.

xlim

x axsis (retention time) limits (see plot.default).

Author(s)

Xavier Domingo-Almenara. xavier.domingo@urv.cat

See Also

plotSpectra plotProfile


erah documentation built on June 22, 2024, 11:01 a.m.