plotAlign: Plotting chromatographic profile with and without alignment

In erah: Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics

Plotting chromatographic profile with and without alignment

Description

Plots the chromatophic profiles of the compounds found by eRah. Similarly to plotProfile, but with two sub-windows, showing the chromatophic profiles before and after alignment.

Usage

plotAlign(Experiment,AlignId, per.class = T, xlim = NULL)

## S4 method for signature 'MetaboSet'
plotAlign(Experiment, AlignId, per.class = T, xlim = NULL)

Arguments

Experiment	A 'MetaboSet' S4 object containing the experiment after being deconolved, aligned and (optionally) identified.
AlignId	the Id identificator for the compound to be shown.
per.class	logical. if TRUE the profiles are shown one color per class, if FALSE one color per sample.
xlim	x axsis (retention time) limits (see plot.default).

Author(s)

Xavier Domingo-Almenara. [e-mail]

See Also

plotSpectra plotProfile

erah documentation built on June 22, 2024, 11:01 a.m.