subtree: subtrees

In extracat: Categorical Data Analysis and Visualization

Description

Takes a subtree of a dendrogram object such as generated by hclust according to a prespecified number of clusters or a prespecified height.

Usage

subtree(tree, k = NULL, h = NULL)

Arguments

tree	The tree object which contains the attributes merge and height in the same way as an hclust object.
k	The number of clusters at which to cut.
h	The height at which to cut.

Details

Does the same as cutree with two differences: Firstly it gives back an entire tree object, i.e. an object with attributes merge, height, labels and order, as well as data, which contains the cluster ids. Secondly the cluster ids are chosen by the heights at which the clusters were built.

Value

An hclust object.

Author(s)

Alexander Pilhoefer

See Also

cutree

Examples

hc <- hclust(dist(USArrests), "ave")

hcs <- subtree(hc, k = 7)
hcs2 <- subtree(hc, h= 30)

attributes(hcs)
fluctile(table(hcs$data, cutree(hc, k=7)))

par(mfrow=c(1,3))
plot(hc)
plot(hcs)
plot(hcs2)

extracat documentation built on July 17, 2018, 5:05 p.m.