fbar: An Extensible Approach to Flux Balance Analysis
Version 0.4.3

A simple package for Flux Balance Analysis and related metabolic modeling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps.

Package details

AuthorMax Conway [aut, cre]
Date of publication2018-04-04 03:38:26 UTC
MaintainerMax Conway <[email protected]>
URL http://maxconway.github.io/fbar/ https://github.com/maxconway/fbar
Package repositoryView on CRAN
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fbar documentation built on April 4, 2018, 9:03 a.m.