fbar: fbar: Flux Balance Analysis in R with a tidy data approach

In fbar: An Extensible Approach to Flux Balance Analysis

Description

fbar is a simple, easy to use Flux Balance Analysis package with a tidy data approach. Just data_frames and the occasional list, no new classes to learn. The focus is on simplicity and speed. Models are expected as a flat table, and results can be simply appended to the table. This makes this package very suitable for use in pipelines with pre- and post- processing of models and results, so that it works well as a backbone for customized methods. Loading, parsing and evaluating a model takes around 0.1s, which, together with the straightforward data structures used, makes this library very suitable for large parameter sweeps.

Details

For a list of functions in the package, see vignette('Introduction','fbar')

fbar documentation built on Sept. 2, 2020, 5:08 p.m.