decompose_metabolites: Decompose a metabolite table into the metabolite stub itself...

In fbar: An Extensible Approach to Flux Balance Analysis

Description

Decompose a metabolite table into the metabolite stub itself and the compartment it is in

Usage

decompose_metabolites(
  met_table,
  compartment_regex = "(\\[[a-zA-Z0-9]+]$)|(_[a-zA-Z]$)"
)

Arguments

met_table	A metabolite table, with one column, met
compartment_regex	Regular expression to identify compartments in model

Value

a metabolite table with the columns chemical and compartment

Examples

data(ecoli_core)

mod <- reactiontbl_to_expanded(ecoli_core)

decompose_metabolites(mod$mets)

recompose_metabolites(decompose_metabolites(mod$mets))

fbar documentation built on Sept. 2, 2020, 5:08 p.m.