Man pages for fbar
An Extensible Approach to Flux Balance Analysis
| decompose_metabolites | Decompose a metabolite table into the metabolite stub itself... |
| ecoli_core | A small E. coli model, created from a number of sources. |
| expanded_to_glpk | Parse a long format metabolic model to a glpk model |
| expanded_to_gurobi | Parse a long format metabolic model to a Gurobi model |
| expanded_to_reactiontbl | Convert intermediate expanded format back to a reaction table |
| expanded_to_ROI | Parse a long format metabolic model to an ROI model |
| fbar | fbar: Flux Balance Analysis in R with a tidy data approach |
| find_fluxes_df | Given a metabolic model as a data frame, return a new data... |
| find_flux_variability_df | Given a metabolic model as a data frame, return a new data... |
| gene_associate | Apply gene expressions to reaction table |
| gene_eval | Function to estimate the expression levels of gene sets |
| get_BiGG | Download a model from a BiGG json file |
| iJO1366 | A full size E. coli model. |
| nutrient_types | A subset of exchange reactions annotated to indicate typical... |
| parse_met_list | Internal function: Expand half reaction equations into a long... |
| reactiontbl_to_expanded | Parse a reaction table to an intermediate, long format |
| reactiontbl_to_gurobi | Parse reaction table to Gurobi format |
| recompose_metabolites | Merge metabolite stub and compartment to form an id |
| split_on_arrow | Internal function: Splitting reaction equation into substrate... |
| validate_expanded | Validate an expanded model |
