API for fido
Bayesian Multinomial Logistic Normal Regression
| Global functions | |
|---|---|
| LINEAR | Man page Source code |
| LaplaceApproximation_test | Source code |
| MultDirichletBoot_test | Source code |
| RISK_CCFA | Man page |
| RISK_CCFA_otu | Man page |
| RISK_CCFA_sam | Man page |
| RISK_CCFA_tax | Man page |
| SE | Man page Source code |
| Y | Man page |
| `names_categories<-.pibblefit` | Source code |
| `names_categories<-` | Source code |
| `names_covariates<-.pibblefit` | Source code |
| `names_covariates<-` | Source code |
| `names_samples<-.pibblefit` | Source code |
| `names_samples<-` | Source code |
| access_dims | Man page |
| alr | Man page Source code |
| alrInv | Man page Source code |
| alrInv_array | Man page Source code Source code |
| alrInv_default_test | Source code |
| alr_array | Man page Source code |
| alr_default_test | Source code |
| alrvar2alrvar | Source code |
| alrvar2clrvar | Source code |
| alrvar2ilrvar | Source code |
| alrvar2varmat | Source code |
| apply_names | Source code |
| args_null | Source code |
| array_apply_1D_function | Source code |
| as.list.orthusfit | Man page Source code |
| as.list.pibblefit | Man page Source code |
| as.orthusfit | Man page Source code |
| as.pibblefit | Man page Source code |
| assign_cat_names | Source code |
| assign_combo_names | Source code |
| basset | Man page Source code |
| basset_fit | Man page |
| check_dims | Man page Source code |
| cholesky_lap_test | Source code |
| clr | Source code |
| clrInv_array | Source code |
| clr_array | Man page Source code |
| clrvar2alrvar | Source code |
| clrvar2ilrvar | Source code |
| clrvar2varmat | Source code |
| coef.orthusfit | Man page Source code |
| coef.pibblefit | Man page Source code |
| conjugateLinearModel | Man page Source code |
| convert_orthus_covariance | Man page |
| create_alr_base | Source code |
| create_clr_base | Source code |
| create_default_ilr_base | Man page Source code |
| eigen_lap_test | Source code |
| fido | Man page |
| fido-package | Man page |
| fido_package | Man page |
| fido_transforms | Man page |
| fillUnitNormal_test | Source code |
| gather_array | Man page Source code |
| glr | Source code |
| glrInv | Source code |
| glrInv_array | Source code |
| glr_array | Source code |
| gradMaltipooCollapsed | Source code |
| gradPibbleCollapsed | Man page Source code |
| hessMaltipooCollapsed | Source code |
| hessPibbleCollapsed | Man page Source code |
| ifnotnull | Source code |
| ilrInv_array | Source code |
| ilr_array | Source code |
| ilrvar2alrvar | Source code |
| ilrvar2clrvar | Source code |
| ilrvar2ilrvar | Source code |
| ilrvar2phi | Source code |
| ilrvar2varmat | Source code |
| kernels | Man page |
| lambda_to_iqlr | Man page Source code |
| lmvgamma | Man page Source code |
| lmvgamma_deriv | Man page Source code |
| loglikMaltipooCollapsed | Source code |
| loglikPibbleCollapsed | Man page Source code |
| mallard | Man page |
| mallard_family | Man page |
| maltipoo | Source code |
| maltipoofit | Source code |
| matrix_maintain_dim | Source code |
| metadata | Man page |
| mifelse | Source code |
| miniclo | Man page |
| miniclo_array | Man page |
| mongrel | Man page Source code |
| mongrel-deprecated | Man page |
| name | Man page Source code |
| name.orthusfit | Man page Source code |
| name.pibblefit | Man page Source code |
| name_array | Source code |
| name_dims | Man page |
| name_tidy | Source code |
| names_categories | Man page Source code |
| names_categories.pibblefit | Man page Source code |
| names_categories<- | Man page |
| names_categories<-.pibblefit | Man page |
| names_coords | Man page Source code |
| names_coords.pibblefit | Man page Source code |
| names_covariates | Man page Source code |
| names_covariates.pibblefit | Man page Source code |
| names_covariates<- | Man page |
| names_covariates<-.pibblefit | Man page |
| names_samples | Man page Source code |
| names_samples.pibblefit | Man page Source code |
| names_samples<- | Man page |
| names_samples<-.pibblefit | Man page |
| ncategories | Man page Source code |
| ncategories.orthusfit | Man page Source code |
| ncategories.pibblefit | Man page Source code |
| ncovariates | Man page Source code |
| ncovariates.orthusfit | Man page Source code |
| ncovariates.pibblefit | Man page Source code |
| new_maltipoofit | Source code |
| new_orthusfit | Source code |
| new_pibblefit | Source code |
| niter | Man page Source code |
| niter.orthusfit | Man page Source code |
| niter.pibblefit | Man page Source code |
| nsamples | Man page Source code |
| nsamples.orthusfit | Man page Source code |
| nsamples.pibblefit | Man page Source code |
| oalr | Man page Source code |
| oalrInv | Man page Source code |
| oalrvar2alrvar | Man page Source code |
| oalrvar2clrvar | Man page Source code |
| oalrvar2ilrvar | Man page Source code |
| oclr | Man page Source code |
| oclrInv | Man page Source code |
| oclrvar2alrvar | Man page Source code |
| oclrvar2ilrvar | Man page Source code |
| oglr | Man page Source code |
| oglrInv | Man page Source code |
| oilr | Man page Source code |
| oilrInv | Man page Source code |
| oilrvar2alrvar | Man page Source code |
| oilrvar2clrvar | Man page Source code |
| oilrvar2ilrvar | Man page Source code |
| optimMaltipooCollapsed | Source code |
| optimPibbleCollapsed | Man page Source code |
| orthus | Man page Source code |
| orthus_fit | Man page |
| orthus_lr_transforms | Man page |
| orthus_sim | Man page Source code |
| orthus_tidy_samples | Man page Source code |
| orthusfit | Man page Source code |
| parse_timer_seconds | Source code |
| pcrbias_mock | Man page |
| pibble | Man page Source code |
| pibble_fit | Man page |
| pibble_sim | Man page Source code |
| pibble_tidy_samples | Man page Source code |
| pibblefit | Man page Source code |
| plot.pibblefit | Man page Source code |
| plot_mf_lambdaeta | Source code |
| plot_mf_sigma | Source code |
| ppc | Man page Source code |
| ppc.pibblefit | Man page Source code |
| ppc_summary | Man page Source code |
| ppc_summary.pibblefit | Man page Source code |
| predict.bassetfit | Man page Source code |
| predict.pibblefit | Man page Source code |
| print.orthusfit | Man page Source code |
| print.pibblefit | Man page Source code |
| r2 | Man page Source code |
| r2.bassetfit | Man page Source code |
| r2.pibblefit | Man page Source code |
| r2_internal | Source code |
| rDirichlet_test | Source code |
| rInvWishRevCholesky_test | Source code |
| rInvWishRevCholesky_thread_inplace_test | Source code |
| rInvWishRevCholesky_thread_test | Source code |
| rMatNormalCholesky_test | Source code |
| rMatUnitNormal_test1 | Source code |
| rMatUnitNormal_test2 | Source code |
| random_pibble_init | Man page Source code |
| reapply_coord | Man page Source code |
| refit | Man page Source code |
| refit.bassetfit | Man page Source code |
| refit.pibblefit | Man page Source code |
| req | Man page Source code |
| req.orthusfit | Man page Source code |
| req.pibblefit | Man page Source code |
| req_maltipoofit | Source code |
| row_var | Source code |
| sample_prior | Man page Source code |
| sample_prior.pibblefit | Man page Source code |
| store_coord | Man page Source code |
| summarise_posterior | Man page Source code |
| summary.orthusfit | Man page Source code |
| summary.pibblefit | Man page Source code |
| summary_check_precomputed | Source code |
| to_alr | Man page Source code |
| to_alr.orthusfit | Man page Source code |
| to_alr.pibblefit | Man page Source code |
| to_clr | Man page Source code |
| to_clr.orthusfit | Man page Source code |
| to_clr.pibblefit | Man page Source code |
| to_ilr | Man page Source code |
| to_ilr.orthusfit | Man page Source code |
| to_ilr.pibblefit | Man page Source code |
| to_proportions | Man page Source code |
| to_proportions.orthusfit | Man page Source code |
| to_proportions.pibblefit | Man page Source code |
| try_set_dims | Source code |
| uncollapsePibble | Man page Source code |
| uncollapsePibble_sigmaKnown | Man page Source code |
| vec_to_mat | Source code |
| verify | Man page Source code |
| verify.bassetfit | Man page Source code |
| verify.orthusfit | Man page Source code |
| verify.pibblefit | Man page Source code |
| verify_maltipoofit | Source code |
