Nothing
tests/testthat/_snaps/finbif_occurrence.md
In finbif: Interface for the 'Finnish Biodiversity Information Facility' API
fetching occurrences works
Code
birds
Output
[1] "\r | \r | | 0%\r | \r |=================================== | 50%\r | \r |======================================================================| 100%"
[2] "\r | \r | | 0%\r | \r |=================================== | 50%\r | \r |======================================================================| 100%"
[3] "Records downloaded: 10 + 10"
[4] "Records available: 914607 + 30983"
[5] "A data.frame [20 x 26]"
[6] " scientific_name abundance lat_wgs84 lon_wgs84 date_time"
[7] "1 Sterna hirundo Linn… 1 60.16747 24.74513 2023-01-01 10:00:00"
[8] "2 Carduelis chloris (… 1 59.9349 24.31358 2023-01-01 10:00:00"
[9] "3 Actitis hypoleucos … NA 62.32828 25.16375 2023-05-11 09:00:00"
[10] "4 Carduelis spinus (L… NA 66.42788 25.78198 2023-06-06 07:30:00"
[11] "5 Larus ridibundus (L… NA 60.89322 25.24684 2023-07-22 09:00:00"
[12] "6 Emberiza rustica (P… 1 64.41557 23.88369 2023-01-01 10:00:00"
[13] "7 Muscicapa striata (… NA 59.98152 24.39941 2023-06-24 09:00:00"
[14] "8 Pinicola enucleator… NA 64.55637 29.81218 2023-02-20 10:00:00"
[15] "9 Sylvia borin (Bodda… NA 63.93279 24.44753 2023-06-12 09:00:00"
[16] "10 Parus major Linnaeu… 12 60.98529 28.56718 2023-03-01 10:00:00"
[17] "...with 10 more records and 21 more variables:"
[18] "coordinates_uncertainty, any_issues, requires_verification,"
[19] "requires_identification, record_reliability, record_quality, duration,"
[20] "date_time_ISO8601, collection, primary_habitat, epsg, occurrence_status,"
[21] "citation, red_list_status, region, informal_groups, common_name,"
[22] "restriction_reason, atlas_code, atlas_class, country"
Code
hr778
Output
Records downloaded: 5
Records available: 5
A data.frame [5 x 12]
record_id scientific_name abundance lat_wgs84 lon_wgs84
1 …10888538 Ceramium tenuicorne… NA 58.79118 17.60312
2 …2475121 Batrachospermum tur… NA 60.50838 19.73372
3 …2475348 Furcellaria lumbric… NA 60.50838 19.73372
4 …2475351 Batrachospermum gel… NA 60.50838 19.73372
5 …2475345 Lemanea fluviatilis… NA 60.31924 24.96965
...with 0 more record and 7 more variables:
date_time, coordinates_uncertainty, any_issues, requires_verification,
requires_identification, record_reliability, record_quality
Code
hr778_no_records
Output
Records downloaded: 0 + 0
Records available: 0 + 0
A data.frame [0 x 3]
[1] municipality local_area set
<0 rows> (or 0-length row.names)
Code
plants
Output
Records downloaded: 51
Records available: 51
A data.frame [51 x 2]
threatened_status orig_taxon_rank
1 NA species
2 NA species
3 NA species
4 NA species
5 NA species
6 NA species
7 NA species
8 NA species
9 NA species
10 NA species
...with 41 more records
Code
occ_print
Output
Records downloaded: 11
Records available: 52796498
A data.frame [11 x 1]
informal_groups
1 3 elements
2 4 elements
3 4 elements
4 3 elements
5 3 elements
6 1 element
7 3 elements
8 1 element
9 1 element
10 1 element
...with 1 more record
fetching occurrences with date filters works
Code
date_filters
Output
Records downloaded: 5 + 5 + 5 + 5 + 5 + 5 + 5
Records available: 1499724 + 1124459 + 1641155 + 893 + 1641155 + 1641155 + 12…
A data.frame [20 x 12]
record_id scientific_name abundance lat_wgs84 lon_wgs84
1 …tun.fi/JX.113239#6 Pica pica (Linnaeus… 17 61.49315 23.71047
2 …tun.fi/JX.113239#8 Corvus corone corni… 81 61.49315 23.71047
3 …tun.fi/JX.113239#21 Regulus regulus (Li… 17 61.49315 23.71047
4 …tun.fi/JX.113239#18 Poecile montanus (C… 7 61.49315 23.71047
5 …tun.fi/JX.113239#3 Columba livia Gmeli… 37 61.49315 23.71047
6 …tun.fi/MY.17232675 Archips podana (Sco… 1 60.21988 24.93102
7 …tun.fi/MY.890425 Dicranum flexicaule… NA 61.1 127.35
8 …tun.fi/MY.890417 Dicranum fuscescens… NA 61.1 127.35
9 …id.luomus.fi/MY.15425361 Udea hamalis (Thunb… 1 60.46742 26.27887
10 …id.luomus.fi/MY.9880728 Hypena crassalis (F… 1 60.45338 26.17924
...with 10 more records and 7 more variables:
date_time, coordinates_uncertainty, any_issues, requires_verification,
requires_identification, record_reliability, record_quality
fetching aggregated occurrences works
Code
record_basis_aggregate
Output
Records downloaded: 3
Records available: 3
A data.frame [3 x 3]
basisOfRecord n_records n_species
1 Heard 445358 173
2 Observation 190973 169
3 Seen 113109 204
Try the finbif package in your browser
Any scripts or data that you put into this service are public.
finbif documentation built on April 12, 2025, 2:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
fetching occurrences works
Code
birds
Output
[1] "\r | \r | | 0%\r | \r |=================================== | 50%\r | \r |======================================================================| 100%"
[2] "\r | \r | | 0%\r | \r |=================================== | 50%\r | \r |======================================================================| 100%"
[3] "Records downloaded: 10 + 10"
[4] "Records available: 914607 + 30983"
[5] "A data.frame [20 x 26]"
[6] " scientific_name abundance lat_wgs84 lon_wgs84 date_time"
[7] "1 Sterna hirundo Linn… 1 60.16747 24.74513 2023-01-01 10:00:00"
[8] "2 Carduelis chloris (… 1 59.9349 24.31358 2023-01-01 10:00:00"
[9] "3 Actitis hypoleucos … NA 62.32828 25.16375 2023-05-11 09:00:00"
[10] "4 Carduelis spinus (L… NA 66.42788 25.78198 2023-06-06 07:30:00"
[11] "5 Larus ridibundus (L… NA 60.89322 25.24684 2023-07-22 09:00:00"
[12] "6 Emberiza rustica (P… 1 64.41557 23.88369 2023-01-01 10:00:00"
[13] "7 Muscicapa striata (… NA 59.98152 24.39941 2023-06-24 09:00:00"
[14] "8 Pinicola enucleator… NA 64.55637 29.81218 2023-02-20 10:00:00"
[15] "9 Sylvia borin (Bodda… NA 63.93279 24.44753 2023-06-12 09:00:00"
[16] "10 Parus major Linnaeu… 12 60.98529 28.56718 2023-03-01 10:00:00"
[17] "...with 10 more records and 21 more variables:"
[18] "coordinates_uncertainty, any_issues, requires_verification,"
[19] "requires_identification, record_reliability, record_quality, duration,"
[20] "date_time_ISO8601, collection, primary_habitat, epsg, occurrence_status,"
[21] "citation, red_list_status, region, informal_groups, common_name,"
[22] "restriction_reason, atlas_code, atlas_class, country"
Code
hr778
Output
Records downloaded: 5
Records available: 5
A data.frame [5 x 12]
record_id scientific_name abundance lat_wgs84 lon_wgs84
1 …10888538 Ceramium tenuicorne… NA 58.79118 17.60312
2 …2475121 Batrachospermum tur… NA 60.50838 19.73372
3 …2475348 Furcellaria lumbric… NA 60.50838 19.73372
4 …2475351 Batrachospermum gel… NA 60.50838 19.73372
5 …2475345 Lemanea fluviatilis… NA 60.31924 24.96965
...with 0 more record and 7 more variables:
date_time, coordinates_uncertainty, any_issues, requires_verification,
requires_identification, record_reliability, record_quality
Code
hr778_no_records
Output
Records downloaded: 0 + 0
Records available: 0 + 0
A data.frame [0 x 3]
[1] municipality local_area set
<0 rows> (or 0-length row.names)
Code
plants
Output
Records downloaded: 51
Records available: 51
A data.frame [51 x 2]
threatened_status orig_taxon_rank
1 NA species
2 NA species
3 NA species
4 NA species
5 NA species
6 NA species
7 NA species
8 NA species
9 NA species
10 NA species
...with 41 more records
Code
occ_print
Output
Records downloaded: 11
Records available: 52796498
A data.frame [11 x 1]
informal_groups
1 3 elements
2 4 elements
3 4 elements
4 3 elements
5 3 elements
6 1 element
7 3 elements
8 1 element
9 1 element
10 1 element
...with 1 more record
fetching occurrences with date filters works
Code
date_filters
Output
Records downloaded: 5 + 5 + 5 + 5 + 5 + 5 + 5
Records available: 1499724 + 1124459 + 1641155 + 893 + 1641155 + 1641155 + 12…
A data.frame [20 x 12]
record_id scientific_name abundance lat_wgs84 lon_wgs84
1 …tun.fi/JX.113239#6 Pica pica (Linnaeus… 17 61.49315 23.71047
2 …tun.fi/JX.113239#8 Corvus corone corni… 81 61.49315 23.71047
3 …tun.fi/JX.113239#21 Regulus regulus (Li… 17 61.49315 23.71047
4 …tun.fi/JX.113239#18 Poecile montanus (C… 7 61.49315 23.71047
5 …tun.fi/JX.113239#3 Columba livia Gmeli… 37 61.49315 23.71047
6 …tun.fi/MY.17232675 Archips podana (Sco… 1 60.21988 24.93102
7 …tun.fi/MY.890425 Dicranum flexicaule… NA 61.1 127.35
8 …tun.fi/MY.890417 Dicranum fuscescens… NA 61.1 127.35
9 …id.luomus.fi/MY.15425361 Udea hamalis (Thunb… 1 60.46742 26.27887
10 …id.luomus.fi/MY.9880728 Hypena crassalis (F… 1 60.45338 26.17924
...with 10 more records and 7 more variables:
date_time, coordinates_uncertainty, any_issues, requires_verification,
requires_identification, record_reliability, record_quality
fetching aggregated occurrences works
Code
record_basis_aggregate
Output
Records downloaded: 3
Records available: 3
A data.frame [3 x 3]
basisOfRecord n_records n_species
1 Heard 445358 173
2 Observation 190973 169
3 Seen 113109 204
Try the finbif package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.