Man pages for frailtypack
Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
| additivePenal | Fit an Additive Frailty model using a semiparametric... |
| bcos | Breast Cosmesis Data |
| cluster | Identify clusters |
| Cmeasures | Concordance measures in shared frailty and Cox proportional... |
| colorectal | Follow-up of metastatic colorectal cancer patients: times of... |
| colorectalLongi | Follow-up of metastatic colorectal cancer patients :... |
| CPRSKbmtcrr | Transformed Bone Marrow Transplant Data for Competing Risks |
| dataAdditive | Simulated data as a gathering of clinical trials databases |
| dataMultiv | Simulated data for two types of recurrent events and a... |
| dataNCC | Simulated data for recurrent events and a terminal event with... |
| dataNested | Simulated data with two levels of grouping |
| dataOvarian | Advanced Ovarian Cancer dataset |
| Diffepoce | Difference of Expected Prognostic Observed Cross-Entropy... |
| epoce | Estimators of the Expected Prognostic Observed Cross-Entropy... |
| event2 | Identify event2 indicator |
| frailtyCmprsk | Fit a Weibull Competing Risks Model with Optional Shared... |
| frailtyDesign | Sample Size calculation and Power Analysis using... |
| frailtyIllnessDeath | Fit a Weibull Illness-Death Model with Optional Shared... |
| frailtypack-package | General Frailty models: shared, joint and nested frailty... |
| frailtyPenal | Fit a Shared, Joint or Nested Frailty model |
| gastadj | Advanced Gastric Cancer dataset |
| GenfrailtyPenal | Fit a Shared or a Joint Frailty Generalized Survival Model |
| hazard | Hazard function. |
| jointRecCompet | Competing Joint Frailty Model: A single type of recurrent... |
| jointSurrCopSimul | Generate survival times for two endpoints using the joint... |
| jointSurroCopPenal | Fit the one-step Joint frailty-copula model for evaluating a... |
| jointSurroPenal | Fit the one-step Joint surrogate model for evaluating a... |
| jointSurroPenalSimul | Simulation studies based on the one-step Joint surrogate... |
| jointSurroTKendall | Kendall's tau estimation using numerical integration methods |
| jointSurrSimul | Generate survival times for two endpoints using the joint... |
| longDat | Longitudinal semicontinuous biomarker dataset (TPJM) |
| longiPenal | Fit a Joint Model for Longitudinal Data and a Terminal Event |
| loocv | The trials leave-one-out crossvalidation for the one-step... |
| multivPenal | Fit a multivariate frailty model for two types of recurrent... |
| num.id | Identify individuals in Joint model for clustered data |
| Paq810 | Filtered Paquid Sample Data Set for Illness-Death Modeling |
| plot.additivePenal | Plot Method for an Additive frailty model. |
| plot.Diffepoce | Plot difference of EPOCE estimators between two joint frailty... |
| plot.epoce | Plot values of estimators of the Expected Prognostic Observed... |
| plot.frailtyCmprsk | Plot Method for a Weibull competing risks model with optional... |
| plot.frailtyIllnessDeath | Plot Method for a Weibull Illness-Death model with optional... |
| plot.frailtyPenal | Plot Method for a Shared frailty model. |
| plot.jointNestedPenal | Plot method for a joint nested frailty model. |
| plot.jointPenal | Plot Method for a Joint frailty model. |
| plot.jointRecCompet | Plot Method for a joint competing risk model with one... |
| plot.jointSurroMed | Plot Method for a joint surrogate mediation analysis model. |
| plot.jointSurroPenal | Plot Method for the one-step Joint surrogate model for the... |
| plot.jointSurroPenalloocv | Plot of trials leave-one-out crossvalidation Outputs from the... |
| plot.longiPenal | Plot Method for a joint model for longitudinal data and a... |
| plot.multivPenal | Plot Method for a multivariate frailty model. |
| plot.nestedPenal | Plot Method for a Nested frailty model. |
| plot.predFrailty | Plot predictions using a Cox or a shared frailty model. |
| plot.predJoint | Plot predictions using a joint frailty model. |
| plot.predLongi | Plot predictions using a joint model for longitudinal data... |
| plotTreatPredJointSurro | Plot of the prediction of the treatment effect on the true... |
| plot.trivPenal | Plot Method for a trivariate joint model for longitudinal... |
| plot.trivPenalNL | Plot Method for a Non-Linear Trivariate Joint Model for... |
| prediction | Prediction probabilities for Cox proportional hazard, Shared,... |
| predict.jointSurroPenal | S3method predict for the one-step Joint surrogate models for... |
| print.additivePenal | Print a Short Summary of parameter estimates of an additive... |
| print.Cmeasures | Print a short summary of results of Cmeasure function. |
| print.frailtyCmprsk | Print a Short Summary of parameter estimates of a Weibull... |
| print.frailtyDesign | Print a short table of a 'frailtyDesign' result. |
| print.frailtyIllnessDeath | Print a Short Summary of parameter estimates of a Weibull... |
| print.frailtyPenal | Print a Short Summary of parameter estimates of a shared... |
| print.jointNestedPenal | Print a Short Summary of parameter estimates of a joint... |
| print.jointPenal | Print a Short Summary of parameter estimates of a joint... |
| print.jointRecCompet | Print a Short Summary of parameter estimates of a joint... |
| print.jointSurroPenal | Summary of the random effects parameters, the fixed treatment... |
| print.longiPenal | Print a Summary of parameter estimates of a joint model for... |
| print.multivPenal | Print a Short Summary of parameter estimates of a... |
| print.nestedPenal | Print a Short Summary of parameter estimates of a nested... |
| print.prediction | Print a short summary of results of prediction function. |
| print.trivPenal | Print a Summary of parameter estimates of a joint model for... |
| print.trivPenalNL | Print a Summary of parameter estimates of a non-linear... |
| readmission | Rehospitalization colorectal cancer |
| readmission2 | Transformed Readmission Data for Illness-Death Modeling |
| reduce | Delirium in critically ill ICU patients dataset: the REDUCE... |
| runShiny | Shiny application for modelisation and prediction of frailty... |
| simulatejointRecCompet | Generating from a joint competing Joint frailty model with a... |
| slope | Identify variable associated with the random slope |
| ste | Surrogate threshold effect for the one-step Joint surrogate... |
| subcluster | Identify subclusters |
| summary.additivePenal | summary of parameter estimates of an additive frailty model |
| summary.frailtyCmprsk | summary of parameter estimates of a Weibull competing risks... |
| summary.frailtyDesign | Summarize a 'frailtyDesign' object. |
| summary.frailtyIllnessDeath | Summary of parameter estimates of a Weibull Illness-Death... |
| summary.frailtyPenal | summary of parameter estimates of a shared frailty model |
| summary.jointNestedPenal | summary of parameter estimates of a joint nested frailty... |
| summary.jointPenal | summary of parameter estimates of a joint frailty model |
| summary.jointRecCompet | Summary method for a joint competing risks midel |
| summary.jointSurroMed | Short summary of the random effects parameters, the fixed... |
| summary.jointSurroPenal | Short summary of the surrogacy evaluation criteria estimated... |
| summary.jointSurroPenalSimul | Short summary of the simulation studies based on a joint... |
| summary.longiPenal | Short summary of fixed covariates estimates of a joint model... |
| summary.multivPenal | summary of parameter estimates of a multivariate frailty... |
| summary.nestedPenal | summary of regression coefficient estimates of a nested... |
| summary.trivPenal | Short summary of fixed covariates estimates of a joint model... |
| summary.trivPenalNL | Short summary of fixed covariates estimates of a non-linear... |
| survDat | Survival dataset (TPJM) |
| SurvIC | Create a survival object for interval censoring and possibly... |
| survival | Survival function |
| terminal | Identify terminal indicator |
| timedep | Identify time-varying effects |
| trivPenal | Fit a Trivariate Joint Model for Longitudinal Data, Recurrent... |
| trivPenalNL | Fit a Non-Linear Trivariate Joint Model for Recurrent Events... |
| wts | Identify weights |
