| allele.counts | This counts the number of alleles at a locus. |
| bins | Example heterozygosity bins from fsthet. |
| calc.actual.fst | This calcualtes global Fsts from a genepop dataframe. |
| calc.allele.freq | This calculates allele frequencies. |
| calc.betahat | This calculates beta-hat, the Fst value used in Lositan. |
| calc.exp.het | This calculates expected heterozygosities. |
| calc.fst | This calculates Fst. |
| calc.theta | This calculates theta. |
| ci.means | This calculates the average confidence intervals from... |
| cis | Example dataframe of smoothed quantiles from fsthet |
| cis.list | Example list of CI matrices from bootstrap output from... |
| fhetboot | This is a wrapper to run the bootstrapping and plot the... |
| find.outliers | This identifies all of the SNPs outside of the smoothed... |
| find.quantiles | Generates quantiles from binned Fst values |
| fst.boot | This is the major bootstrapping function to calculate... |
| fst.boot.means | Calculates mean values within the bins. |
| fst.boot.onecol | This bootstraps across all individuals to calculate a... |
| fsthet | This is a wrapper to generate and plot the smoothed quantiles... |
| fst.options.print | This prints the options for choosing an Fst calculation. |
| fsts | Example fst calculations from a genepop file. |
| fsts.beta | Example fst calculations from a genepop file. |
| fsts.betahat | Example fst calculations from a genepop file. |
| fsts.theta | Example fst calculations from a genepop file. |
| gpop | Example genepop file from numerical simulations |
| make.bins | This sorts Fst values into a designated number of overlapping... |
| my.read.genepop | This reads a genepop file into R |
| p.boot | Calculates mean values within the bins. |
| plotting.cis | This plots a dataframe of fsts with bootstrapped confidence... |
| quant.out | Example fsthet output based on numerical simulations |
| remove.spaces | This removes spaces from a character vector |
| var.fst | This calculates Cockerham & Weir's Beta. |
